Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02087 atggctGGAAGATTGCCTGGTGTTGGAGTGccaccaaggaagagagaccaacaCCACCGACATAAACATTATCGTACCACTTACAGCTACTCGAATGGAAGAGAAACACTCACGGAGGCACCAAGTGTTCCCGTCTCTGCCATGGATGAAACTGCTCTTAAAGCAAGGCAACGCTTGGAGCAGAAGCTTGGACACTTGTATTCCTCTATCTGCAGGTCAAGTTACAATTCAACAAGTGAAGGGAAAGAGAGTGAAAGTGGAGTGGAGAAGAAGGAGAGTGGCTTGAGTCTGAAACTGTTAAGAAAATCATGCTTGTTGGGTCTGAACAGATTCAAAAAGGAGAGGAAAATGTGTGCAGTTTGCTTGGAAGATTTTGAGGAAGAAGAGCAAGTGATGAGCCTTTCCTGCTCCCATAAGTACCATTCAGCATGTCTTCTGCCATGGCTTGCTGCCAATCCACATTGCCCCTACTGTCGAACCCCAGTTCACCACTG 494 0.4393 MAGRLPGVGVPPRKRDQHHRHKHYRTTYSYSNGRETLTEAPSVPVSAMDETALKARQRLEQKLGHLYSSICRSSYNSTSEGKESESGVEKKESGLSLKLLRKSCLLGLNRFKKERKMCAVCLEDFEEEEQVMSLSCSHKYHSACLLPWLAANPHCPYCRTPVHH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02087 164 CDD RING-H2_PA-TM-RING 118 159 - -
Bva05g02087 164 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Bva05g02087 164 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 34 161 - -
Bva05g02087 164 SUPERFAMILY RING/U-box 111 162 - -
Bva05g02087 164 SMART ring_2 118 158 IPR001841 -
Bva05g02087 164 MobiDBLite consensus disorder prediction 1 26 - -
Bva05g02087 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 164 IPR013083 -
Bva05g02087 164 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 161 - -
Bva05g02087 164 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02087 Bva-Chr5 15811679 15812791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02087 112 159 C3H Transcription Factor Family AT3G58720 47.917 1.81e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02087 - - gmx:100527548 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02087 05 15811679 15812791 Bva05g02087 05 15811679 15812791 ECH