Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02037 ATGGAGCCGGGCATGAGATCAGGTGGCCCTTCTGGGGTTGTGGTGAAGAACAGGAACTCTTCAGGTTGTTTGATTGTGAGGAAGAAGGGGGATGGGTTTGGTGGCGGGCTTGGTTCTTCTAGCTCACGGAACCTGTATGAAtcgaagaagatgaagaaaaggcCCAGTGTGCCGTTGAGTGATTCAGGATCAAGCGATGAGTTACCGATGCCTCCTAGTGGAAGGCTTGGTCCTGAGACTATTCGAGTCTGTAATGGTTTGACTGCTTTTGAACGGGGCATGATGGAAGGGAGTGAAATTGCTAGAAAGAGGGATATAATGGAGCAAATTAGGCGTAATGAGGATGAATTGATTGATAGGAATGGTTTGGAGGAGAGGGAAAGGAAACGGAATAGATTGGAtgtgtttgattttgatgaatatGATGGTATTGAGGCCGGAAATATGCAAAGGAGGCATTTTGATGATAATGGAGTTGGGTTTGGGGGAAGAAGGTTTATGGGATCAATGCATGCTGCTAGAAGTGGCATTGGGAGGGACTTTGAGACAGGGTCAAGTAGACACAtcattgaaaagagaaaaaatccCTATTATGAGAGGGGAAGTGGCTTGTATCTGGGAGATAATGTTGATCATAGCAGATACAAAATGAACAGGGATGTAGCTCAACTGCCTCTGCCGTTGTTGAGAGAAAAGCATATGGTTAATTCAGATGAATCTATTAGAGTTCAAGGGAAAAATGGTGTTTTAAAGGTGATGGTTAAGAAGAAGGTAGGCGGGCCATTAGAACACTATGATCACCGCAAACCTGCAGAAAGCAGACGGAATTTGAGGACTGAGGGCACCCCTAAGAGGAATGTTCTGATCCATCCTTCATCATACTCTGAAACAAAACTTGTTGAGAAATCAGGTGTAGCTGTTAGGGCAGAGAAAAAGCagataaaatcaagaaaatcatTGTCAAGTAAGGACCCTAAGGGTAATGAAGGGGATTCAGAAGACTGTGACGACTCATTAAATCTGGGACTAAAGAACGGTGAAGCTCGTAAGTCTGTGAAGAGGATAAGTTCTGAGGATGAGCAGACTCCTTTGCCTGAAAAGCTTCcaaatacaaaaatgaaagaaggaaaagtcAGACGTGGTAGTGGCACGGAGAAACAGAAGCTGCGTGAACGGATAAGGGAAATGCTGTTGAATTCTGGTTGGACTATAGACTATCGGCCTAGAAGGAATAGAGACTACCTAGATGCAGTTTACATCAGTCCAGGGGGTACAGCCTATTGGTCAATCGTCAAGGCCTATGATGCACTACAAAAGCAATTAAGTGATTCTAATAATAAGCCCATGCCCAAGGGAGATGGTTCTTCCTTTGATCCTATCTCAGATGAGGTACTCAGTCAATTGACTAGGAAAACCCGGAAAAAGATGgagaaagaattgaagaagaagcaaagagaTGGTAGTGATAGTGAAAGTGGAAAAGAACCTCATTTTAGAGGATCTGCAAGCAACAGGCTTGATGTGGATAGCATGGATAGTGATagcaatgaagagaaattaagcTCCTTCTTAAAGCAGGGAAGTAAACCAATGAAACATAAGATTGTTGATAATGCTGTTGCCAGTGCTTGCTCTAAAGGCCAGAACTCCAATCAGCACTCAAATGATGGCACAGAAAAACCTTTGTCTGGAAGTGACCGTCATGTGCTACATGGAAGGAAAAGCAGAAAGCATGATAGATGTACCTTGTTAGTTCGTAGTTCCGGGAAGGGAGTGAGCTCTGACTCTGATGGCTATGTACCTTATACAGGAAAACGCACAATCCTTTCATGGTTGATTGACTCAGGAACAGTAAAGTTAAGCCAAAAGGTTCAATACCGCAGAAGAAAGCGAGTAATGCTGGAGGGTTGGATCACAAGAGACGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGATTCATGCAGGAAGCAAAATACGGCAGCCTTTCCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCTTGGAATAGACAAGAGGATGctaaaaaaattggttttcaTTCTGTAGATATTGATGGTGACGATCCAAATGATGATACATGTGGTATATGTGGAGATGGTGGGGATCTTATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGaTGCTTCCCCCAGGTGACTGGCACTGTCCAAACTGTACCTGCAAATATTGTGGAATAGCCAGCAGAAGTATTAAAAAGGGAGATGATGCAACTGTATACGCACTTCATACTTGCAAGATATGTGAGAAAAAATACCATGAGACTTGCACTAAGGAGATGGATGCCCTTCCTGTTACTCCCAATAGTTCAATTCCTTCCTTTTGTGGAAAAGAATGCAAAGAGATTTTTGAGCACTTGAAGAAGTATCTTGGTACCAAGCATGAGCTAGAATCAGGCTTTTCCTGGTCACTGATTCATAGAACAGATGAAGACTCAGAAGCATTTAGTAGAGGAATTTCTCAGAGGGTGGAGTGCAACTCCAAGCTAGCTGTTGCACTCAGTGTGATGGATGAATGCTTCTTACCTGTTGTTGACTGCAGAAGTGGgatcaatttaattcataatGTTTTATACAATAGTGGATCCAACTTCAATCGGTTGAATTATAGTGGCTTTTACACTGCTATTTTGGAGAGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCACGGGACTAAGTTAGCGGAGATGCCATTCATTGGAACTCGCCACATATATAGGCATCAGGGGATGTTACGGAGGCTTTTTTCTGCCATTGAATCAGCTCTCTGCactttgaaagttgaaaaactGGTTATTCCTGCAATTGCTGAACTTGTGCACACCTGGACAACGGTTTTTGGCTTCACTCCTCTTGAGGATTCACTTAGGCACGAAATGAGATCATTGAGCATGCTGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGCTAGTGGAGCAAGGAAAATTTGACGGTAACACAACCACTGCAGaTGCTGAACCAACAGAAAGTGGAGACAAGCTTCCTATTAAGCCTGATACTGCAAATAGATCAGATATGGATTCCTCAGCTCAGCAAGATCCTCATGGAAGTGATGATGCTGACTCACATCCTGCTAATGAGGCAGCTGAAGAAAGTAGTGATGCTTCTTATGAACTCAACAATCAATTATCAGTTGATGGGACTATATCTTCTAAATCTCATTCTGGGAAAAGATTAGTTGACTCGGCCTCAGAAAACTCTGTTTCTCCTGCTAGTACTAGTCACGGTGCATTAGAGGAGGAAAGTAAAGCAGTGCTGGCTTCCCCCATTGAAGATAAATTAAGTTGTTCTCCAAAATGTCAAGGCTCTTCTCAAAATGGTGCTTCTCTGAGTAGTGATCCATTAGAAGCTCCGGATTCCCTTGAAAATCCAGCTTTGGTTGACGGAACTGCTTGTTCTGACCCTGATTCAGTGGAAAAGCTTGTTGGATCTTGTCCCACGGCCATGGATTGTGATCCACCAGCGGTTGAGACTAATCCAATGTTGGATTCTCAAGTACAAGATAATGCTATATCTTCTGAAGAGGATGATATAAATGATGTCCATGAGGATCTTGAAGCTCTTCCTTCCTCGAGGGGTTTATCTGAAGAAAATGTTACTGAGGGGATGAACGGCAATGTAAATGTTTCAGGTTGTATTCTCAATTCTTCTGATAAAATTTCCTTGCAGATGAGATCTAATTTGAACGGTGAAGTTgcatatgaaaaaagaaagttagatCATGGAACAGAAGTTGTTTCTAATGTTGATGGTTCTGTTGAAAGTGGGTTCGATGCATCTGATGGTGATACTTCAGAGACTGATTCAGTATG 3944 0.4059 MEPGMRSGGPSGVVVKNRNSSGCLIVRKKGDGFGGGLGSSSSRNLYESKKMKKRPSVPLSDSGSSDELPMPPSGRLGPETIRVCNGLTAFERGMMEGSEIARKRDIMEQIRRNEDELIDRNGLEERERKRNRLDVFDFDEYDGIEAGNMQRRHFDDNGVGFGGRRFMGSMHAARSGIGRDFETGSSRHIIEKRKNPYYERGSGLYLGDNVDHSRYKMNRDVAQLPLPLLREKHMVNSDESIRVQGKNGVLKVMVKKKVGGPLEHYDHRKPAESRRNLRTEGTPKRNVLIHPSSYSETKLVEKSGVAVRAEKKQIKSRKSLSSKDPKGNEGDSEDCDDSLNLGLKNGEARKSVKRISSEDEQTPLPEKLPNTKMKEGKVRRGSGTEKQKLRERIREMLLNSGWTIDYRPRRNRDYLDAVYISPGGTAYWSIVKAYDALQKQLSDSNNKPMPKGDGSSFDPISDEVLSQLTRKTRKKMEKELKKKQRDGSDSESGKEPHFRGSASNRLDVDSMDSDSNEEKLSSFLKQGSKPMKHKIVDNAVASACSKGQNSNQHSNDGTEKPLSGSDRHVLHGRKSRKHDRCTLLVRSSGKGVSSDSDGYVPYTGKRTILSWLIDSGTVKLSQKVQYRRRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKIRQPFQNIYLDSGVSLLQCQIDAWNRQEDAKKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKYCGIASRSIKKGDDATVYALHTCKICEKKYHETCTKEMDALPVTPNSSIPSFCGKECKEIFEHLKKYLGTKHELESGFSWSLIHRTDEDSEAFSRGISQRVECNSKLAVALSVMDECFLPVVDCRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMLRRLFSAIESALCTLKVEKLVIPAIAELVHTWTTVFGFTPLEDSLRHEMRSLSMLVFPGIDMLQKLLVEQGKFDDAEPTESGDKLPIKPDTANRSDMDSSAQQDPHGSDDADSHPANEAAEESSDASYELNNQLSVDGTISSKSHSGKRLVDSASENSVSPASTSHGALEEESKAVLASPIEDKLSCSPKCQGSSQNGASLSSDPLEAPDSLENPALVDGTACSDPDSVEKLVGSCPTAMDCDPPAVETNPMLDSQVQDNAISSEEDDINDVHEDLEALPSSRGLSEENVTEGMNGNVNVSGCILNSSDKISLQMRSNLNGEVAYEKRKLDHGTEVVSNVDGSVESGFDASDGDTSETDSV 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1276 1308 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 27 79 - -
Bva05g02037 1308 Pfam PHD-finger 714 756 IPR019787 -
Bva05g02037 1308 PANTHER PHD FINGER FAMILY PROTEIN 1 1147 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1050 1066 - -
Bva05g02037 1308 Pfam Tify domain binding domain 636 686 IPR032308 -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 544 577 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1021 1038 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1071 1114 - -
Bva05g02037 1308 ProSitePatterns Zinc finger PHD-type signature. 714 753 IPR019786 -
Bva05g02037 1308 ProSiteProfiles Zinc finger PHD-type profile. 711 756 IPR019787 -
Bva05g02037 1308 Coils Coil 466 486 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1021 1122 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 260 281 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1286 1302 - -
Bva05g02037 1308 SUPERFAMILY FYVE/PHD zinc finger 703 759 IPR011011 -
Bva05g02037 1308 SMART PHD_3 713 754 IPR001965 -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 442 532 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1 20 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 303 340 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 544 559 - -
Bva05g02037 1308 CDD PHD2_CHD_II 714 753 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 347 361 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1134 1170 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 467 502 - -
Bva05g02037 1308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 806 IPR013083 -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 370 387 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 1135 1151 - -
Bva05g02037 1308 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1147 - -
Bva05g02037 1308 MobiDBLite consensus disorder prediction 260 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02037 Bva-Chr5 15493492 15502362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02037 4 1073 PHD Transcription Factor Family AT4G14920 49.361 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva05g02037 TDBD 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02037 - - gmx:102666194 1587.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02037 05 15493492 15502362 Bva05g02037 05 15493492 15502362 ECH