Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02020 ATGTTGTCAAATCATTTCCAAAACGGAATCGAAACAGCGAAGCTTGTTTGGTCGCGGATTCCCGGCTCCGAGGAATCTTTACCGTATCTCGACGACACCCTTGGCCTCTTGAAGAAGAACGATGGTAGCGGAGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTATGCGTATCGGGAAGAACAGGCGAAAAGAGGGAAACTGTATGTGGGCTATTTGCTGGTGGTGAAGTGGTTCTTTTCCTTACTCATTGGCATTGGTACTGGGCTTGCTGCCGTTTTCATCAATATCTCTGTTGAAAACTTTGCTGGCTGGAAGTTCTCATTGACGTTTGATATAATTCAGAAATCATATGTGGCTGGCTTTATCGTATATGTCTTGATCAATTTGGCTTTAGTCTATTCCTCTGTATATATCATTACGCAATTTGCACCAGCCGCAGCTGGATCTGGTATTCCTGAAATCAAAGGTTACTTGAATGGAATTGATGTTCATGGCATCCTCCTTTTCAGAACCTTAATTGGAAAGATTTTTGGAAGCATTGGTTCAGTGGGTGGTGGCCTTGCCTTAGGAAAAGAGGGTCCTCTTGTGCACACTGGTGCCTGTATTGCTTCTTTGTTTGGACAGGGTGGATCCACCAAGTATCATTTGAGTTCAAGGTGGTTTCAAGTATTTAAAAGTGATCGAGATCGTCGTGACCTTGTAACATGTGGATGTGCAGCTGGAGTTGCAGCTGCATTTAGAGCCCCAGTAGGTGGTGTGTTGTTCGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTCTTCACTTCGGCTATCGTGGCTGTTGTGGTGCGTTCCGCAATGGGATGGTGCAAGAGTGGAAAGTGTGGACATTTTGGCTCAGGTGGATTCATTATATGGGATATATCAGGTGGTCAAGAGGATTACTCCTTTGCAGAGTTACTGCCAATGGCCATTATTGGTGTTATTGGTGGTCTACTTGGAGCCTTATTTAACCAGCTTACTCTTTATGTTTCTTCCTGGCGTCGAAATCATCTGCACAAGAAAGGGAGCCGAGTCAAGATTGTTGAAGCATGCCTTGTTTCCGTGATAACATCAGTTATTTCATTTGGCTTGCCGCTCCTGAGAAAATGTACTCCATGCCCTGAATCTGTTCCTGATTCTAATATTGAATGTCCACGAGGTCCTGGAATGTATGGGAACTATGTAAATTTCTTTTGTAGCAAAGACAAGGAATACAATGATCTTGCCACTATTTTCTTCAATACGCAGGATGACGCCATAAGGAATTTGTTCAGtgcaaaaacaataaatgaatacAGTGCTCAGAGTTTATTAACCTTTCTGGTTATGTTTTATGCTTTAGCAGTGATGACATTTGGCACTGCTGTTCCAGCTGGACAATTTGTTCCTGGAATAATGATAGGGTCAACATATGGACGTCTTGTTGGCATGTTTGTTGTGAAATTTTACAGACGGCTCAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCAGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTCTCTCTCTGTGTCATTATGGTTGAAATCACAAATAACTTAAAGCTTTTACCACTTATTATGCTGGTCCTCCTTATATCAAAGGCTGTTGGAGATGCTTTTAATGAGGGTTTCTATGAAGAGCAAGCACGACTGAAGGGCATTCCATTACTTGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCTTGTGGGACTGAAAGGGTGGTCTCCTTCCCTCGTGTTGTTAAGGTTGCAGATATGGTTTCCATTCTGCGGAGCAATAAACACAATGGTTTTCCTGTGATTGATCACACAAGAACTGGCGAACCACTTGTTATTGGGTTAGTGCTTCGGAGCCATTTATTGGTAATTTTGCAGTCAAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCCCGAAGTGGAGCCAGACCAATAAGACATGATTTTGGTGAATTTGCAAAGCCTGTTTCCAGTAAAGGATTAAGCATAGAGGATATACATCTAAGTTCCGATGACTTGGAAATGTACATAGATCTTGCCCCTTTTCTGAATCCCTCTCCATACATTGTACCCGAAGATATGTCTGTTACAAAGGTGTACAATCTTTTCCGACAACTAGGTTTGCGGCATTTGTTTGTTGTTCCACGTCCTTCCCACGTGCTTGGTTTAATAACCAGGAAAGATTTGTTGATTGAGGACACAGAAAATATGAATACAGTAGAGCTCCAGTCAACTAGTGTAAGAACTCGGCATTGTGATAAAGGAGTGATGACAAGGAATGCAGATGCTGAGCGCCCTTTGCTAAATGGGATTCTGGGTCGAGATAACATCTG 2405 0.4262 MLSNHFQNGIETAKLVWSRIPGSEESLPYLDDTLGLLKKNDGSGVESLDYEVIENYAYREEQAKRGKLYVGYLLVVKWFFSLLIGIGTGLAAVFINISVENFAGWKFSLTFDIIQKSYVAGFIVYVLINLALVYSSVYIITQFAPAAAGSGIPEIKGYLNGIDVHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLFGQGGSTKYHLSSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISGGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYVSSWRRNHLHKKGSRVKIVEACLVSVITSVISFGLPLLRKCTPCPESVPDSNIECPRGPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSAQSLLTFLVMFYALAVMTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKFYRRLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGFYEEQARLKGIPLLESRPKYEMRNMTAKEACGTERVVSFPRVVKVADMVSILRSNKHNGFPVIDHTRTGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRSGARPIRHDFGEFAKPVSSKGLSIEDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSVTKVYNLFRQLGLRHLFVVPRPSHVLGLITRKDLLIEDTENMNTVELQSTSVRTRHCDKGVMTRNADAERPLLNGILGRDNI 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02020 801 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 794 - -
Bva05g02020 801 SUPERFAMILY Clc chloride channel 55 577 IPR014743 -
Bva05g02020 801 Pfam CBS domain 708 754 IPR000644 -
Bva05g02020 801 Gene3D Clc chloride channel 71 576 - -
Bva05g02020 801 SMART cbs_1 710 758 IPR000644 -
Bva05g02020 801 SMART cbs_1 596 648 IPR000644 -
Bva05g02020 801 Gene3D - 590 760 IPR046342 -
Bva05g02020 801 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Bva05g02020 801 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g02020 801 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g02020 801 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g02020 801 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g02020 801 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva05g02020 801 ProSiteProfiles CBS domain profile. 707 764 IPR000644 -
Bva05g02020 801 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Bva05g02020 801 CDD ClC_6_like 46 575 - -
Bva05g02020 801 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva05g02020 801 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 794 - -
Bva05g02020 801 Pfam Voltage gated chloride channel 135 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02020 Bva-Chr5 15388861 15397603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02020 1 773 Ion Channels AT5G26240 84.496 0.0 1265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02020 K05016 - gmx:100811908 1417.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02020 05 15388861 15397603 Bva05g02020 05 15388861 15397603 ECH