Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02012 atgttttgttttctctgcAAAACCATTGTTTCTCAGACTCGTAGGTATGGGAACCCCATTTGCCCAACAACAACGAAAGTGCTGCTCATCCAAAAACAATGGTTTTCGCCGAAATCCAAGTCAAGTTCTTTAGAGAAGCAGTCTATTACAGTTTCATACCTTATTAACACATGTGGGTTCTCGCCAGAAGAAGCTGCTTCAACTTCCAAGTACATGAATCTTGTAACTCGAGAGAAAGCAGATTCGGTGATTAAGTTCTTGGAGAACCAAGGCTTCTCACGAGCTCAGGCGTTACGTGTTATCAGAGTGCAGCCAGTATTGCTTCGATACGATGCTGAGAAAACATTCCTGCCCAAAATCGAATTTTTGAAGTCCAGAGGCATTTTGAACTCTGAAATTTTCCAAATCATAGTTAATTGCCCTGATATCCTAAAGAGAAGCTTAGAGAAGCGAATCATTCcttcttttgatttctttacaGATTTGTTTCAGTCTGAAGGTAAGTTCATTGAAGCTCTTAGACGTTACTCGGGTTTCATCGTTGATTTTGACATTTACATAGCACCTAATATCAAAACATTAAGAGACGAAGGAGTTCCTGAGTgccaaattatgaaattattagaaaagaatCCAAGGTCATTGAGGAAAAATCCTGATCAATTTAAGAATATTGTGGAACAAGTGAAGAAAATGGGGTTTGATCCTTTGGCGAGGCTGTTTTGTATTGCTGTTGCTGTTATGGCAGGTATAAGCAAATCCACATGGGAAAGGAAAGTTCAAATTCTTAACAAGTGGGGTTGGTCTGAGAATGAGATTCTTGCGGCATTCAGGAAAAATCCAGGCTGTATGATGATTTCAGAGGAAAAGATTGATGTGGTTATGGAATTTTTTGTCAACAAAATGGGCTTTGAGCCTTCTGTTATTGCTAGACGTCCAATAATGGTGAGTATGAGCTTGGACAAGCGCATTATTCCAAGGGCTTCTGTTGTTCAGGTTTTGTTGTCAAAGGGTTTGTTGCACGAGCTGAACTTGAGTGCAATTTTTGATTGTACTGAAAGGgattttttgaaaagatttgTCTTGCCTCATGAGAAGGAAGCTGATGAACTATTGAAGCTGTATCAGGCTAAACTGGACCATGCAAGGTG 1151 0.3762 MFCFLCKTIVSQTRRYGNPICPTTTKVLLIQKQWFSPKSKSSSLEKQSITVSYLINTCGFSPEEAASTSKYMNLVTREKADSVIKFLENQGFSRAQALRVIRVQPVLLRYDAEKTFLPKIEFLKSRGILNSEIFQIIVNCPDILKRSLEKRIIPSFDFFTDLFQSEGKFIEALRRYSGFIVDFDIYIAPNIKTLRDEGVPECQIMKLLEKNPRSLRKNPDQFKNIVEQVKKMGFDPLARLFCIAVAVMAGISKSTWERKVQILNKWGWSENEILAAFRKNPGCMMISEEKIDVVMEFFVNKMGFEPSVIARRPIMVSMSLDKRIIPRASVVQVLLSKGLLHELNLSAIFDCTERDFLKRFVLPHEKEADELLKLYQAKLDHAR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02012 383 Pfam mTERF 84 235 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 Pfam mTERF 245 357 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 Gene3D Transcription termination factor 3, mitochondrial 182 374 IPR038538 -
Bva05g02012 383 Gene3D Transcription termination factor 3, mitochondrial 63 181 IPR038538 -
Bva05g02012 383 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Bva05g02012 383 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 36 380 - -
Bva05g02012 383 PANTHER CGI-12 PROTEIN-RELATED 36 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02012 Bva-Chr5 15340477 15341935 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g02012 mTERF 3.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02012 K15032 - jre:108987210 379.407