Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02010 ATGGTCATGCCTCAGCTCGACTCCATCGACCATGCCCAGCAGACCAAGACACTGATTTGTGCTCTCAACCTTGTTTCCCGCGACCTCCCTCTCCCCCATGACCTCTTTCACACCGTTTCTTCCATCTATAATGGCGCCGAGGGCGCCGACACTGATGCACAACAATGTGGGGTTCGTGATGACAGTGCCGGTGGAGCTGGATCTGATGAGAAAACCGTGGATAGGGATGCCCAGATGGGTTTGGATGGCTTAGGGAATTCAAGAGTAGATTTATTAACAGAGTTTGAAGATGCAATATTGAAGCAACGTCCAAATTGTCTGTCAGGTTTTAAATTGAAGGAAACATGGGAAAACCGTTATCAAAGTCTGATTCAACATCGGTTAAATGAACTTGAAGAGTTGCCTTCAAGTAGGGGAGAGGATTTGCAGACAAAGTGCCTGCTTGAACTGTATGGACTAAAGCTAGCAGAGTTTCAGAGGAAGATCAGGTCTGAAATAAGTTCTGAATACTGGCTCAAAGTCAAATGTGCGTATCCTGATAAGCAATTATTTGATTGGGGAATGATGCGGTTGCACCGTCCAATGTATGGTGTTGGAGATCCATTCTCCATGGATGCTGATGATCAACTAAGGAAGAAAAGGGATGCTGAGAGACTCTCAAGATTAGAAGAGGAGGAAAAGAATCTtatagaaaccaaaaaaagaaaattttttgcaGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAACTTCAAGCTTCTTTGAAACGGAGAAAACAGAGGAATGATGGCATCCAGGCTTGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCATACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGACTGACTTTGCTTCTGGAAGAAACCAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAGAAGGACTCAAAACATTTGGATGGCATTGAACCCTTGGATGATTCTGAAGCTGATTTACCAGAGTCAGAAGCTTCAAAGAATGGCATTTCTAAAGAATCTCCTTCTGAGGAAGATACGGACATGACAGATTCTGATCATAATGGTGATGATAGTGATTTACTTGCAGGTCAGAGGCAATACAACTCTGCCATCCATTCGATTCAAGAAAAGGTAACTGAGCAACCATCTTCTCTCCAAGGTGGAGAATTAAGATCATACCAGATAGAAGGACTCCAGTGGATGCTTTCGTTGTTTAATAACAATCTAAATGGAATTTTGGCTGATGAAATGGGGCTCGGGAAGACAATACAAACCATTTCATTGATAGCATATCTTATGGAGTATAAGGGGGTGACTGGTCCCCACTTGATTGTGGCGCCAAAGGCTGTTCTGCCAAATTGGATCAATGAGTTCTCAACATGGGTTCCTAGCATTACAACTGTTCTTTATGATGGACGGCTGGAAGAGAGGAAGGCAATGAAGGAAGAATTGTCTGGGGAGGGAAAATTTAATGTTCTGATAACACACTATGATCTTATCATGAGAGATAAAGCAtttctaaagaaaattcaCTGGTACTACTTAATTGTAGACGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAATCCTTGACTCCAGCTATCACATCCAACGCAGACTCCTGTTGACCGGAACTCCAATTCAAAATAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTCCTGcttccaaatatttttaattcagttCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTTTCTCTCACAGATGAAGAACAGCTACTGATCATTCGCCGTTTGCACCAAGTAATAAGGCCTTTCATcttaagaaggaaaaaagatgaGGTGGAAAAGTATCTTCCAAGCAAATCTCAGGTCATACTCAAATGCGATATGTCAGCATGGCAGAAAGTATATTATCATCAAGTTACTGACTTGGGCAGAGTTGGTTTAGACAATGGTACTGGGAAGTCAAAAAGCCTACAGAATCTAACAATGCAACTGAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGACTACGGTAATATGTGGAATAAGGACGAGATTATCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGAAGAGCTGGGCACAGAGTCCTCCTTTTCTCGCAAATGACTCGTCTCATGGACATTCTCGAAGTCTATCTGCGGATGCATGATTACTGTTTTCTTAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGGTCTCTACTACGGAAGTTCAATGCTCCTGATTCTCCATACTTCATGTTTCTCTTGAGTACCCGTGCTGGAGGTCTTGGTCTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGGGCTCATCGTATCggacaaaagaaagaagttaGAGTTTTTGTGTTGGTTAGTGTGGGATCAATAGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCGGGACTTTTCAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTACGAGCTCTCTCGGGACAGATGTACCGAGTGAGAGAGAAATCAACCGGCTTGCGGCCCGATCAGACGAGGAATTTTGGCTATTTGAGAAAATGGATGAAGAGAGAAGGCAGAAAGAGAACTACCGATCTCGTTTGATGGAAGAGCATGAAGTGCCTGAGTGGGTTTACTCTGCAGCAGCTAGTAAGGATGATAAGCCCAAAGGTTTTGACAGTGCCGGGGTTACTGGAAagcgaaaaagaaaagatgtgGCATATTCGGATAACTTGAGTGATCTGCAGTTTATGAAGGCTGTGGAGAATGGGGACATGCCAAGCATTCTAAGTAGAGGGAAAAGAAGAGACCGCACACCATCGGATAGCATGGGAGCAGAGGAAAGGTTGTCGGATTTAAGGAACGAAAGTGTCCCTGTCTCCATGGAAAATGAGAGAACAAGTGCAGATAGCTTCCATGTCACTCCATCCCCCAAGAGATTCAAGCCTGAAGTAACCAACACCCACACCCAGAAAGATGAATCCGAGGGTGCTAGTGGGGGTAGTTTGAATGAGCATGTTTTTTCCTGGAGTACCCACAAAAAGAAGAGATCAAGCTATCTTGCCCAGGGTTCCTTGTCTGATTCTAGAGGACAGAATTCAAATGGAAGATCAAAGTGGAGCTG 3344 0.4237 MVMPQLDSIDHAQQTKTLICALNLVSRDLPLPHDLFHTVSSIYNGAEGADTDAQQCGVRDDSAGGAGSDEKTVDRDAQMGLDGLGNSRVDLLTEFEDAILKQRPNCLSGFKLKETWENRYQSLIQHRLNELEELPSSRGEDLQTKCLLELYGLKLAEFQRKIRSEISSEYWLKVKCAYPDKQLFDWGMMRLHRPMYGVGDPFSMDADDQLRKKRDAERLSRLEEEEKNLIETKKRKFFAEILNAVREFQLQLQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHLDGIEPLDDSEADLPESEASKNGISKESPSEEDTDMTDSDHNGDDSDLLAGQRQYNSAIHSIQEKVTEQPSSLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARILDSSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPSKSQVILKCDMSAWQKVYYHQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYGNMWNKDEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLRMHDYCFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAAASKDDKPKGFDSAGVTGKRKRKDVAYSDNLSDLQFMKAVENGDMPSILSRGKRRDRTPSDSMGAEERLSDLRNESVPVSMENERTSADSFHVTPSPKRFKPEVTNTHTQKDESEGASGGSLNEHVFSWSTHKKKRSSYLAQGSLSDSRGQNSNGRSKWS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02010 1114 Pfam Snf2-ATP coupling, chromatin remodelling complex 930 991 IPR029295 GO:0042393
Bva05g02010 1114 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 893 IPR001650 -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 53 72 - -
Bva05g02010 1114 SMART helicmild6 752 836 IPR001650 -
Bva05g02010 1114 SMART ultradead3 408 601 IPR014001 -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 999 1114 - -
Bva05g02010 1114 Pfam Helicase conserved C-terminal domain 723 836 IPR001650 -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 1065 1114 - -
Bva05g02010 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 637 IPR027417 -
Bva05g02010 1114 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 590 IPR014001 -
Bva05g02010 1114 PANTHER ATP-DEPENDENT HELICASE BRM 10 1064 - -
Bva05g02010 1114 Pfam SNF2-related domain 415 703 IPR000330 GO:0005524|GO:0140658
Bva05g02010 1114 MobiDBLite consensus disorder prediction 954 978 - -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 359 381 - -
Bva05g02010 1114 Coils Coil 212 236 - -
Bva05g02010 1114 Coils Coil 927 947 - -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 959 978 - -
Bva05g02010 1114 CDD SF2_C_SNF 714 847 - -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 329 383 - -
Bva05g02010 1114 MobiDBLite consensus disorder prediction 1002 1027 - -
Bva05g02010 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 890 IPR027417 -
Bva05g02010 1114 SMART SnAC_2 929 991 IPR029295 GO:0042393
Bva05g02010 1114 MobiDBLite consensus disorder prediction 1030 1047 - -
Bva05g02010 1114 Gene3D - 643 943 IPR027417 -
Bva05g02010 1114 Gene3D - 383 636 IPR038718 -
Bva05g02010 1114 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02010 Bva-Chr5 15321320 15334886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02010 698 864 RAD5 or RAD16-like Gene Family AT5G43530 34.503 1.00e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva05g02010 SNF2_N 9.2e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02010 - - gmx:100786280 1763.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02010 05 15321320 15334886 Bva14g00742 14 3438760 3439575 BWGD
Bva05g02010 05 15321320 15334886 Bva05g02010 05 15321320 15334886 ECH