LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva05g02010	ATGGTCATGCCTCAGCTCGACTCCATCGACCATGCCCAGCAGACCAAGACACTGATTTGTGCTCTCAACCTTGTTTCCCGCGACCTCCCTCTCCCCCATGACCTCTTTCACACCGTTTCTTCCATCTATAATGGCGCCGAGGGCGCCGACACTGATGCACAACAATGTGGGGTTCGTGATGACAGTGCCGGTGGAGCTGGATCTGATGAGAAAACCGTGGATAGGGATGCCCAGATGGGTTTGGATGGCTTAGGGAATTCAAGAGTAGATTTATTAACAGAGTTTGAAGATGCAATATTGAAGCAACGTCCAAATTGTCTGTCAGGTTTTAAATTGAAGGAAACATGGGAAAACCGTTATCAAAGTCTGATTCAACATCGGTTAAATGAACTTGAAGAGTTGCCTTCAAGTAGGGGAGAGGATTTGCAGACAAAGTGCCTGCTTGAACTGTATGGACTAAAGCTAGCAGAGTTTCAGAGGAAGATCAGGTCTGAAATAAGTTCTGAATACTGGCTCAAAGTCAAATGTGCGTATCCTGATAAGCAATTATTTGATTGGGGAATGATGCGGTTGCACCGTCCAATGTATGGTGTTGGAGATCCATTCTCCATGGATGCTGATGATCAACTAAGGAAGAAAAGGGATGCTGAGAGACTCTCAAGATTAGAAGAGGAGGAAAAGAATCTtatagaaaccaaaaaaagaaaattttttgcaGAAATACTGAATGCTGTCCGTGAGTTCCAATTACAACTTCAAGCTTCTTTGAAACGGAGAAAACAGAGGAATGATGGCATCCAGGCTTGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCATACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGACTGACTTTGCTTCTGGAAGAAACCAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAGAAGGACTCAAAACATTTGGATGGCATTGAACCCTTGGATGATTCTGAAGCTGATTTACCAGAGTCAGAAGCTTCAAAGAATGGCATTTCTAAAGAATCTCCTTCTGAGGAAGATACGGACATGACAGATTCTGATCATAATGGTGATGATAGTGATTTACTTGCAGGTCAGAGGCAATACAACTCTGCCATCCATTCGATTCAAGAAAAGGTAACTGAGCAACCATCTTCTCTCCAAGGTGGAGAATTAAGATCATACCAGATAGAAGGACTCCAGTGGATGCTTTCGTTGTTTAATAACAATCTAAATGGAATTTTGGCTGATGAAATGGGGCTCGGGAAGACAATACAAACCATTTCATTGATAGCATATCTTATGGAGTATAAGGGGGTGACTGGTCCCCACTTGATTGTGGCGCCAAAGGCTGTTCTGCCAAATTGGATCAATGAGTTCTCAACATGGGTTCCTAGCATTACAACTGTTCTTTATGATGGACGGCTGGAAGAGAGGAAGGCAATGAAGGAAGAATTGTCTGGGGAGGGAAAATTTAATGTTCTGATAACACACTATGATCTTATCATGAGAGATAAAGCAtttctaaagaaaattcaCTGGTACTACTTAATTGTAGACGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAATCCTTGACTCCAGCTATCACATCCAACGCAGACTCCTGTTGACCGGAACTCCAATTCAAAATAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTCCTGcttccaaatatttttaattcagttCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTTTCTCTCACAGATGAAGAACAGCTACTGATCATTCGCCGTTTGCACCAAGTAATAAGGCCTTTCATcttaagaaggaaaaaagatgaGGTGGAAAAGTATCTTCCAAGCAAATCTCAGGTCATACTCAAATGCGATATGTCAGCATGGCAGAAAGTATATTATCATCAAGTTACTGACTTGGGCAGAGTTGGTTTAGACAATGGTACTGGGAAGTCAAAAAGCCTACAGAATCTAACAATGCAACTGAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGACTACGGTAATATGTGGAATAAGGACGAGATTATCAGAGCATCAGGGAAGTTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGAAGAGCTGGGCACAGAGTCCTCCTTTTCTCGCAAATGACTCGTCTCATGGACATTCTCGAAGTCTATCTGCGGATGCATGATTACTGTTTTCTTAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGGTCTCTACTACGGAAGTTCAATGCTCCTGATTCTCCATACTTCATGTTTCTCTTGAGTACCCGTGCTGGAGGTCTTGGTCTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGGGCTCATCGTATCggacaaaagaaagaagttaGAGTTTTTGTGTTGGTTAGTGTGGGATCAATAGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCGGGACTTTTCAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTACGAGCTCTCTCGGGACAGATGTACCGAGTGAGAGAGAAATCAACCGGCTTGCGGCCCGATCAGACGAGGAATTTTGGCTATTTGAGAAAATGGATGAAGAGAGAAGGCAGAAAGAGAACTACCGATCTCGTTTGATGGAAGAGCATGAAGTGCCTGAGTGGGTTTACTCTGCAGCAGCTAGTAAGGATGATAAGCCCAAAGGTTTTGACAGTGCCGGGGTTACTGGAAagcgaaaaagaaaagatgtgGCATATTCGGATAACTTGAGTGATCTGCAGTTTATGAAGGCTGTGGAGAATGGGGACATGCCAAGCATTCTAAGTAGAGGGAAAAGAAGAGACCGCACACCATCGGATAGCATGGGAGCAGAGGAAAGGTTGTCGGATTTAAGGAACGAAAGTGTCCCTGTCTCCATGGAAAATGAGAGAACAAGTGCAGATAGCTTCCATGTCACTCCATCCCCCAAGAGATTCAAGCCTGAAGTAACCAACACCCACACCCAGAAAGATGAATCCGAGGGTGCTAGTGGGGGTAGTTTGAATGAGCATGTTTTTTCCTGGAGTACCCACAAAAAGAAGAGATCAAGCTATCTTGCCCAGGGTTCCTTGTCTGATTCTAGAGGACAGAATTCAAATGGAAGATCAAAGTGGAGCTG	3344	0.4237	MVMPQLDSIDHAQQTKTLICALNLVSRDLPLPHDLFHTVSSIYNGAEGADTDAQQCGVRDDSAGGAGSDEKTVDRDAQMGLDGLGNSRVDLLTEFEDAILKQRPNCLSGFKLKETWENRYQSLIQHRLNELEELPSSRGEDLQTKCLLELYGLKLAEFQRKIRSEISSEYWLKVKCAYPDKQLFDWGMMRLHRPMYGVGDPFSMDADDQLRKKRDAERLSRLEEEEKNLIETKKRKFFAEILNAVREFQLQLQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHLDGIEPLDDSEADLPESEASKNGISKESPSEEDTDMTDSDHNGDDSDLLAGQRQYNSAIHSIQEKVTEQPSSLQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLEERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARILDSSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPSKSQVILKCDMSAWQKVYYHQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYGNMWNKDEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLRMHDYCFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHEVPEWVYSAAASKDDKPKGFDSAGVTGKRKRKDVAYSDNLSDLQFMKAVENGDMPSILSRGKRRDRTPSDSMGAEERLSDLRNESVPVSMENERTSADSFHVTPSPKRFKPEVTNTHTQKDESEGASGGSLNEHVFSWSTHKKKRSSYLAQGSLSDSRGQNSNGRSKWS	1114

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva05g02010	1114	Pfam	Snf2-ATP coupling, chromatin remodelling complex	930	991	IPR029295	GO:0042393
	Bva05g02010	1114	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	726	893	IPR001650	-
	Bva05g02010	1114	MobiDBLite	consensus disorder prediction	53	72	-	-
	Bva05g02010	1114	SMART	helicmild6	752	836	IPR001650	-
	Bva05g02010	1114	SMART	ultradead3	408	601	IPR014001	-
	Bva05g02010	1114	MobiDBLite	consensus disorder prediction	999	1114	-	-
	Bva05g02010	1114	Pfam	Helicase conserved C-terminal domain	723	836	IPR001650	-
	Bva05g02010	1114	MobiDBLite	consensus disorder prediction	1065	1114	-	-
	Bva05g02010	1114	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	388	637	IPR027417	-
	Bva05g02010	1114	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	424	590	IPR014001	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva05g02010	Bva-Chr5	15321320	15334886	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva05g02010	698	864	RAD5 or RAD16-like Gene Family	AT5G43530	34.503	1.00e-20	97.1

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Bva05g02010		SNF2_N	9.2e-69	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva05g02010	-		-	gmx:100786280	1763.81

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva05g02010	05	15321320	15334886	Bva14g00742	14	3438760	3439575	BWGD
	Bva05g02010	05	15321320	15334886	Bva05g02010	05	15321320	15334886	ECH

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