Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02009 ATGATGGATATGGTTGAGAGCATTGtcactctctttcttctccttatgCTGCTGGTGATAATTGTGATCATCTTCTTTTCCTGTAAACCATGGcgcttctttttctctcctcgTTTCCGCTCCATCAAGGTTGGTGGTGAGCTAGAGAGGCCCCTTGTCTCAGAGCTAGAGAGGCGCCTTGTCTCAGATGAATCTGATGTGTTACGTAACCAGAGCAATGAATTGCCAAGAGATTATGATCCTGAGGGAGCATGCTTTCCAAATGAAGCCCGAGCCCATGGACTTGTTCACAAGCAGAGGCTTCCTTCTGGTTCTCCCAATGTGCTTGGAGGTGATAGCTTGGTTTTAGAGGTAGTCTCTGATTCTCTAGAAGATATTGAGGTTGGTCAAACCCTTAAGCGGCCTCCATCCCAGTTAGCAGAAATTCAAAAGCATAGTAGACTGAGTTTTGAAGATGATAGACTACAAGACTTTGTGCAAAGGGACATCTTAGATCaaaGAAGTTGCCTCACTCTGGAGGTTATCAGTGGGCCTGCTTCTGGGCGTCATTGTTCTGTACAGTCAACAAATCCGTCTAGGCTACCATTGACACTTGGAAGACTTTCAAATGATATAGcaataaatgataaagaaGTGTCTGGAAAGCATGCACTAATACAATGGAACTCAGATaaaatgaaatgggAGGTGGTAGATATGGGAAGCCTGAATGgaacatatttaaattctcaGCCAATCCACCATCCAGACATTGGGAGCAGGCATTGGGGTGATCCAATTGGGCTTGCTAATGGAGATATCATAAAACTTGGAACAACATCACAAGTAATTgTTCATATTACATCTCAAAGTAAGGATCACATTCCTTTTGGAGTAGGAATGGCATCAGATGCCATGGCTGTGCGTCGAGGAGGAAAGAAGCTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTAACTGGGCTGGATCAGTTTGGACTGTTTGGCGTTTGTGATGGGCATGGTGGAGATGGGGCTGCCAAATCCGCTAGCAAGCTCTTGCCTGAGATGGTTGCTAATTTATTATCCGATTCattaaaaagagagagggtTTTATCACTCCATGATGCTTCTGATGTTCTTAGAGAAGCATTTTGTCAGACAGAAGCATGCCTAAGTAACCAATATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGGCTGATGGTGATGAAAACTTTTTCGCACAATGTGCAAATGTTGGTGACTCTACCTGTATTATGAATGTTGATGGGCAACAACTTAGGATGTCAGAGgatcataaaataacaaatatttctGAAAGACTCAGGATCGGAGAGGCAGGTGAACCATTGAAAGATGGGGAAACACGCCTATACGGTATAAATCTTGGAAGGATGCTTGGAGACAAATTTCTTAAACAGCAGGATCCCCGGTTCAGTTCAGAGCCTTATATAAGTGAGGTTGTGCATATTGGtcaagcaagcaaggcgttTGCCCTACTAGCAAGTGATGGACTGTGGGATGTAATCAGCACAAAGAAGGCAGTTCAGCTGGTGCAGCAGATGAGGGAGAAATACTCGGCAGAAGGAAAGAAATGTGCAGAAAAGATTGCTAATTTCTTGTTGGATGAGGCTAAAACACTGAGAACAAGGGATAATACCTCTGTAATATTCTTAGATTTTGATAGCTCCACCAAATTTACTTGTAAAGCTGAATCCTA 1727 0.4019 MMDMVESIVTLFLLLMLLVIIVIIFFSCKPWRFFFSPRFRSIKVGGELERPLVSELERRLVSDESDVLRNQSNELPRDYDPEGACFPNEARAHGLVHKQRLPSGSPNVLGGDSLVLEVVSDSLEDIEVGQTLKRPPSQLAEIQKHSRLSFEDDRLQDFVQRDILDQRSCLTLEVISGPASGRHCSVQSTNPSRLPLTLGRLSNDIAINDKEVSGKHALIQWNSDKMKWEVVDMGSLNGTYLNSQPIHHPDIGSRHWGDPIGLANGDIIKLGTTSQVIVHITSQSKDHIPFGVGMASDAMAVRRGGKKLPMEDVCYYQWPLTGLDQFGLFGVCDGHGGDGAAKSASKLLPEMVANLLSDSLKRERVLSLHDASDVLREAFCQTEACLSNQYEGCTATVLLVWADGDENFFAQCANVGDSTCIMNVDGQQLRMSEDHKITNISERLRIGEAGEPLKDGETRLYGINLGRMLGDKFLKQQDPRFSSEPYISEVVHIGQASKAFALLASDGLWDVISTKKAVQLVQQMREKYSAEGKKCAEKIANFLLDEAKTLRTRDNTSVIFLDFDSSTKFTCKAES 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02009 575 PANTHER PROTEIN PHOSPHATASE 2C 70 50 574 - -
Bva05g02009 575 CDD PP2Cc 303 563 IPR001932 -
Bva05g02009 575 Pfam Protein phosphatase 2C 299 556 IPR001932 -
Bva05g02009 575 ProSitePatterns PPM-type phosphatase domain signature. 328 336 IPR000222 GO:0043169
Bva05g02009 575 Gene3D - 165 296 - -
Bva05g02009 575 CDD FHA 170 274 IPR000253 GO:0005515
Bva05g02009 575 ProSiteProfiles PPM-type phosphatase domain profile. 291 563 IPR001932 -
Bva05g02009 575 SUPERFAMILY SMAD/FHA domain 168 278 IPR008984 GO:0005515
Bva05g02009 575 Gene3D - 297 574 IPR036457 -
Bva05g02009 575 SUPERFAMILY PP2C-like 299 564 IPR036457 -
Bva05g02009 575 PANTHER PROTEIN PHOSPHATASE 2C 50 574 IPR015655 GO:0004722|GO:0006470
Bva05g02009 575 SMART PP2C_4 285 561 IPR001932 -
Bva05g02009 575 Pfam FHA domain 197 271 IPR000253 GO:0005515
Bva05g02009 575 ProSiteProfiles Forkhead-associated (FHA) domain profile. 196 246 IPR000253 GO:0005515
Bva05g02009 575 SMART FHA_2 195 246 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02009 Bva-Chr5 15312945 15319544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02009 7 566 PP2C-type Phosphatase Gene Family AT5G19280 55.892 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02009 K01090 - gmx:100170642 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02009 05 15312945 15319544 Bva05g02009 05 15312945 15319544 ECH