Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g02001 ATGGCAAATTTCACCCCCTCCTCTTCTGCAACAGCTCCATTTCATGCTGACATTCTACCCTTCACAGCTGCATCGCCTTCTGCAGCTTTGGACGACGGTTCTGAGGACTCATGTAGTATTTGTCTTGACCCTTTCAGCACTGATGAGCCAGCTACTgTTACCAGTTGCAAGCATGAGTATCATCTGCATTGCATTCTAGAATGGTCTCAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTGTCTTGAAAGATCCTGGCAGCCAAAAGCTTGTAGCTGCAGTGGAGGACGAGGAGCACTTAAGATCAAGAAGCACAAATTTGTCTACATCCACTAATTCTAGGAGCTCCCTTGAACGGCGTAATGCTGATCATGATGACTCTTATTCAGATGACTCTGATTTTGATGAACAGATTATGCAGCGCCTAGTTGCTGCTGCGAGAAGAGCTCGTTTTTTTCGCAGAAGGGAAAGGCAAAGATCATCTGGAGCTGGTCCTTCAGATAACTCCCCTTCGAATGTCTCCGCAGTGCAACCTAGGCTTACAACTTCACCATCTGTAAGTAGTGCACCAACTTCTGGTGTAACATCTGCTGGTGACATTCAACATTCACCATCTGTTTTCTCCCTTGGTGTTGAAGCTGCTGCAAGAAATACCACTTCTGAGAATGATGCCCCTTTCAGACCCAGAGTTCTTTATAGACAGTCACGCTCTCAGAGTGTGAGGAGACCAAATGCTTCTGATGTGTTATCCTTGCCAGAGTCCATCAAGTGCAAATTTTCTGCTGCTTCAGCCAAATACAAGGAATCAATTACAAAAAACACTCGTGGCCTTAAAGAGAAGTTAATTGCTCGTAGTCCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCCGGTGTTGCAAAGATGATTGAACGCCTTGATCTTACTTCAAAACGGTCCTCAGCTTCTGCTCTCATTCCCAGCTTTTCGCAGAAGGGAATGAGAGGAGAAAATGGTATTGGAGAGTCTATCAGTAAAGAAAGTGGTGCTGTGGCCCGTAATGTTAATTCGGATTCACCTTCTCCTGTTTCCAGCTTGATTAGAAGCTCATCTTA 1121 0.4514 MANFTPSSSATAPFHADILPFTAASPSAALDDGSEDSCSICLDPFSTDEPATVTSCKHEYHLHCILEWSQRSKECPICWQLLVLKDPGSQKLVAAVEDEEHLRSRSTNLSTSTNSRSSLERRNADHDDSYSDDSDFDEQIMQRLVAAARRARFFRRRERQRSSGAGPSDNSPSNVSAVQPRLTTSPSVSSAPTSGVTSAGDIQHSPSVFSLGVEAAARNTTSENDAPFRPRVLYRQSRSQSVRRPNASDVLSLPESIKCKFSAASAKYKESITKNTRGLKEKLIARSPSVKELSKGVQREMNAGIAGVAKMIERLDLTSKRSSASALIPSFSQKGMRGENGIGESISKESGAVARNVNSDSPSPVSSLIRSSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g02001 373 Pfam Ring finger domain 36 78 IPR001841 -
Bva05g02001 373 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 343 - -
Bva05g02001 373 MobiDBLite consensus disorder prediction 351 373 - -
Bva05g02001 373 MobiDBLite consensus disorder prediction 99 135 - -
Bva05g02001 373 MobiDBLite consensus disorder prediction 328 373 - -
Bva05g02001 373 ProSiteProfiles Zinc finger RING-type profile. 38 78 IPR001841 -
Bva05g02001 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 91 IPR013083 -
Bva05g02001 373 SMART ring_2 38 78 IPR001841 -
Bva05g02001 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 343 - -
Bva05g02001 373 SUPERFAMILY RING/U-box 31 85 - -
Bva05g02001 373 MobiDBLite consensus disorder prediction 155 203 - -
Bva05g02001 373 MobiDBLite consensus disorder prediction 164 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g02001 Bva-Chr5 15252351 15254925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g02001 30 86 C3H Transcription Factor Family AT4G00335 45.614 9.91e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g02001 K19043 - gmx:100775754 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g02001 05 15252351 15254925 Bva05g02001 05 15252351 15254925 ECH