Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01976 ATGGCTCGAATCAGTACATATACACTCCAAATCCCCCTGTTTCAAGGTCATGGACGCTCCGCCATTTCAAACCCTTCATTCCCAGTCCCTGAGGCACTAATTTTGACTCGAACAAAGTACCCAAAGATTTCTTCAACATCAATTTCTGTCTCGTTCAGGCCAACTCTTTCATGGGTTTGCTGCAGAGCCAGCTCCAGCTCTTCTGTGGAATCTAATGAATCTTCTTCAACTAAAATCTTCATTAAAGGGCTTCCTAAGTCAATTACTGAAGGTCGATTGGAGAAGGCATTCTCAGAGTATGGTGAAGTTAGTCAAGTCAAGCTTCCCTTGGATAAAGAATCTGGAGAGGCTTTAGGATATGCATATATTTGGTTTGCCAAGGAAGAGTCTGCACAATTGGCCGTGAAAGAGATGAATGGAAAGTTTTTCGATGGCAGGTTTATTTATGTCACAATTGCAAGGCATGACTCATCAAAAAGTTGGAGGAATCCAGCACCCTACAAGTTTTA 509 0.4224 MARISTYTLQIPLFQGHGRSAISNPSFPVPEALILTRTKYPKISSTSISVSFRPTLSWVCCRASSSSSVESNESSSTKIFIKGLPKSITEGRLEKAFSEYGEVSQVKLPLDKESGEALGYAYIWFAKEESAQLAVKEMNGKFFDGRFIYVTIARHDSSKSWRNPAPYKF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01976 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Bva05g01976 169 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 51 169 - -
Bva05g01976 169 CDD RRM_SF 79 150 - -
Bva05g01976 169 SUPERFAMILY RNA-binding domain, RBD 62 163 IPR035979 GO:0003676
Bva05g01976 169 SMART rrm1_1 78 151 IPR000504 GO:0003723
Bva05g01976 169 Gene3D - 61 163 IPR012677 -
Bva05g01976 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Bva05g01976 169 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 51 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01976 Bva-Chr5 15100462 15103113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01976 71 167 Eukaryotic Initiation Factors Gene Family AT4G34110 27.835 3.92e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01976 - - jre:109005896 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01976 05 15100462 15103113 Bva05g01976 05 15100462 15103113 ECH