Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01955 ATGATTAAGGAAAACCCGCTAGGTGTAGAACTCGCAATAAATAATGCCACTGGGGAGGGGATAATGGGATCTGTGCATGAACCATTTATAGGGTTAGAATTTGAATCAGCAGATGAAGCACTTGAGTTTTACACATCATATGGAAAGCGAGTTGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGATCAGTTTCTTCTCGAAGATATGTATGCTCAAAGGAGGGATATCAGCTGAGTTCACGAACAGGTTGTCCAGCATATATAAGGGTACAAATACATGATTCCGGCAAGTGGGTTGTTGATCATTTCCTGAGGGACCACAATCATGATCTTGAACCTGAAGGTGAAGATTTTGCTCCTATTTTGCAGCAGAAGAGTCCTACAGCTTTAAAATCTTTCACCAATGTGTCCcgcaaacaaaagaaaaaattgctgGTAGCATACAAGGATGACAACTCTTGTCCCGTCggcattattaatttcaagcGTCTTAGAGAGGAAGGAGACGAAGGACGATCCAGGCTTGAACCATTTATTGGCAAAGAGTTCAGTTCAGCTAATGAAGCTTACCAATTTTATCATGCATATGCAGTTTATGCGGGATTCAGAATACGTATTGGTCAATTATTTCGATCCAAGAATGATGGGTTGATTACATCCCGACGATTTGTGTGTGCAAAGGAAGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCATATTTGAGGATTAAGAGACAACCATCTGGAAAGTGGGTGGTGGACCGCCTTCAGAAAGATCATAATCATAAACTGGAACCTGAACAGGAGGATGGGCAAAATGGCATTCCTGcttcaaatattttgagagAGGAGGTAAACTCTGGATTAGGAAACAGTAACTTCTTTAAAATAGATAACTACACGATCCCTAAAAGAAGTAGAGAAAATCACATTAAAAGTGATTGGTACAGTCTGCTTTCTGAATATTTTCAAGCTAGACAAGCGGAAGACACCGGATTCTTTTATGCTATGGAAATTGATAATGGTAACTGCAGGAGCATATTTTGGTCTGATGGCAGATCTAGATATTCATGCAGTCAGTTTGGTGATGTCATTGTTTTGGATTCATCATATCGGACAGATGTGTATATGGTGCCGTTTGCCACTTTTGTTGGAGTCAACCATCATAAGCAGCCTGTGCTTCTTGGATGTGCTCTGATTGCTGATGAATCTGAAGAGTCATTCACTTGGCTGTTACGGACATGGCTGAGGGCAATGTCTGGCCGGCAGCCAGTCTCAATAGTTGCTGATCAAGATGTTGCAATCCAGCGGGCAATAGCAAAAGTCTTTCCAGGAACCCATCATCGTTTTTCATTGTGGCAAATTAAGGCAAAGGAACAGGAGAATTTGGGTCGGCTGGGTGAAGGCTTCACAAATGACTATGAAAAGTGTGTTTACCACAGTCAGACGGCTGATGAATTTGACGCCACATGGAATGCCTTGCTTAACAAATATGGATTGAAGGACAGTGCTTGGGTACAGGAAATGTATGAGAAGCGTGCATCTTGGGTTCCTTTATATTTAAGGAGCACGTTTTTTGCTGGCATTCCAATGAATGAATGTGTTGAGTCATACTTTGGTACGCTTTTAAATGCCCATACACCTCTCACAGAGTTCATTTCACGGTATGAAAGAGGTCTTGAGCGGCGCCGtgaggaagaaagaagaaaggattTTGATACGTCCAGTTTTCAGCCTGTTTTGCAAACAAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTATACACTTACCATATTCAAAGTGTTTCAAAAAGAACTTCTACAATGCTATAGTTATCTCGGTTTTAAAATCTATGAGGAAGGGGGCCTCAGCAGATATTTGGTTCGTAAGTGCGGGAATGATATTGAGAGGCATATGGTTACCTTTTCTACCTCCAATCTCAGTGTTAGCTGTAGCTGTCAGATGTTTGAATATGAAGGTGTCCTTTGCAGACATGTCTTAAGGGTTTTTCAAATATTGGAGTTAAAAGAAGTTCCTTCGCGCTACATCTTGCACCGATGGACAAGAAGTGCTGAGGACAGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCTCAGGAACTCAGGAATTTGATGCTATGGAGTCTCAGAGAAACTGCATGTAAATATGTAGATGCTGGTGCGACATCACTTGAAAACTACAAGCTTGCCTATGAGATTTTGCGGGAGGGAGGAAGAAAACTATGTTGGCCTAGGTA 2279 0.4041 MIKENPLGVELAINNATGEGIMGSVHEPFIGLEFESADEALEFYTSYGKRVGFKVRIGQLYRSRTDGSVSSRRYVCSKEGYQLSSRTGCPAYIRVQIHDSGKWVVDHFLRDHNHDLEPEGEDFAPILQQKSPTALKSFTNVSRKQKKKLLVAYKDDNSCPVGIINFKRLREEGDEGRSRLEPFIGKEFSSANEAYQFYHAYAVYAGFRIRIGQLFRSKNDGLITSRRFVCAKEGFQHPSRVGCGAYLRIKRQPSGKWVVDRLQKDHNHKLEPEQEDGQNGIPASNILREEVNSGLGNSNFFKIDNYTIPKRSRENHIKSDWYSLLSEYFQARQAEDTGFFYAMEIDNGNCRSIFWSDGRSRYSCSQFGDVIVLDSSYRTDVYMVPFATFVGVNHHKQPVLLGCALIADESEESFTWLLRTWLRAMSGRQPVSIVADQDVAIQRAIAKVFPGTHHRFSLWQIKAKEQENLGRLGEGFTNDYEKCVYHSQTADEFDATWNALLNKYGLKDSAWVQEMYEKRASWVPLYLRSTFFAGIPMNECVESYFGTLLNAHTPLTEFISRYERGLERRREEERRKDFDTSSFQPVLQTKEPVEEQCRRLYTLTIFKVFQKELLQCYSYLGFKIYEEGGLSRYLVRKCGNDIERHMVTFSTSNLSVSCSCQMFEYEGVLCRHVLRVFQILELKEVPSRYILHRWTRSAEDSVFPDIESWSSSQELRNLMLWSLRETACKYVDAGATSLENYKLAYEILREGGRKLCWPR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01955 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 755 - -
Bva05g01955 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 755 IPR031052 GO:0006355
Bva05g01955 759 Pfam FAR1 DNA-binding domain 42 117 IPR004330 -
Bva05g01955 759 Pfam FAR1 DNA-binding domain 196 271 IPR004330 -
Bva05g01955 759 Pfam MULE transposase domain 370 463 IPR018289 -
Bva05g01955 759 ProSiteProfiles Zinc finger SWIM-type profile. 645 681 IPR007527 GO:0008270
Bva05g01955 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 122 IPR031052 GO:0006355
Bva05g01955 759 Pfam SWIM zinc finger 654 678 IPR007527 GO:0008270
Bva05g01955 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 23 122 - -
Bva05g01955 759 SMART 26again6 656 683 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01955 Bva-Chr5 14976657 14980103 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva05g01955 MULE 5.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01955 - - gmx:100816656 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01955 05 14976657 14980103 Bva05g01955 05 14976657 14980103 ECH