Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01937 ATGGCCAATGACCCACAAGCACCACCTAAAAATTTCCACGAGTTAGATAGAGaggacaaagaagaaaagaagaaggacatAGGAGAAACGCATAAGgacaaagaagagagactGGACAAAGGAGAAAAGCAGCaggacaaagaagaaaaactggaCAAAGGAGATAAGCAGAatgacaaggaagaaaagcAGAAGAGCCAAGAAGAAATACGGACAAGTTCTTTGAGAAACAGAGCAACAAGATATGGGTTTTCTGATTCATTTGCAACCATTGACTTGGCATCTTTAGAGATCGAGGGTGTAGCTGAGTGCTCTTCTAGAGATGTGCCGGAAGATTACTCCAGTAGTTTTGAATCTGAAGCATCCTCTTCCAATCCTGGCGCTTCTGATGGAGAGGGTCAGCCAGATTCTAGAGGCACTGCCCATTCGCGTGGTCTCTTCCGGTTACTGAGGAAAGGACCCCACATGCGCCTCCAAAACTTTCATCCGCTTAAAAACGTTCCAAAACTCGccagaagaaaaagtaaaagagtcAGGGAAGACTTGATTCCATCAATGAATGCTGCACAACGGCAACCAACTCTTGACGCTGATCAGCTTAGCCACTTCAAATCTTCCTggaaaaatttttctttttcacagaTCCAGGCTGCAACAAACGACTTCAGCCATGaaaatttgctTGGGGAGGGAGGTTATGCCGAAGTTTACTTAGGAAAATTCGAAGATGGGCAATTTGTTGCTATTAAAAAGCTTACAAGAGGAAATCCAGATGAAATGGCTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGACCATCCCAATATTGCCAAATTGATTGGATATGGTGTTGAAGGGGGAATGTTCCTTATTCTTCAATTATCTCCAAACGGAAGCCTATCATCCATACTTTATGGACCCCGAGAGAAACTGAACTGGGCCATCAGATATAAAATTGCTTTGGGGACTGCTGAGGGCCTTTGGTATCTGCACGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTGCTAATATACTACTCATGGAGGATTTTGGGCCTCAGATATCTGATTTTGGCCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTTGAAGGCACATTTGGCTACCTTCCTCCCGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGACGTATTCGCTTATGGAGTGCTATTGTTGGAGCTTATTTCTGGACGACAAGCCATTGATAGCTCTCAGAAAAGTCTGGTGATGTGGGCAAAACCATTAATAtctcaaaacaaaatcaaagagCTAATTGATTCATGTCTAGCTGGTGCTTATAATGAGGAAGAGATGAATCGTCTAATCTTGACAGCTTCAGCATGTGTAGATCAGTCTGCAAGTCAGCGACCAGATATGAACCAGGCATTACGGATGCTAAAAGGTGATGAAGAATGCTTGAAGCTCGTGAAGGAAAGCCAGAAGTCATCTAGACTACAGAGGACGTACTCTGAAGAGCTCTTGGATGCAGAAGAGTACAACTCAACTAAGCTTTTGCAAGACCCAGATCAACTTATGGCGATGATTCTAAGCTCCTGCAACTCTCTTAAAGAAGAAAGCACTGAAGATTA 1652 0.3953 MANDPQAPPKNFHELDREDKEEKKKDIGETHKDKEERLDKGEKQQDKEEKLDKGDKQNDKEEKQKSQEEIRTSSLRNRATRYGFSDSFATIDLASLEIEGVAECSSRDVPEDYSSSFESEASSSNPGASDGEGQPDSRGTAHSRGLFRLLRKGPHMRLQNFHPLKNVPKLARRKSKRVREDLIPSMNAAQRQPTLDADQLSHFKSSWKNFSFSQIQAATNDFSHENLLGEGGYAEVYLGKFEDGQFVAIKKLTRGNPDEMAADFLSELGIIVHVDHPNIAKLIGYGVEGGMFLILQLSPNGSLSSILYGPREKLNWAIRYKIALGTAEGLWYLHEGCQRRIIHKDIKAANILLMEDFGPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVFAYGVLLLELISGRQAIDSSQKSLVMWAKPLISQNKIKELIDSCLAGAYNEEEMNRLILTASACVDQSASQRPDMNQALRMLKGDEECLKLVKESQKSSRLQRTYSEELLDAEEYNSTKLLQDPDQLMAMILSSCNSLKEESTED 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01937 550 ProSitePatterns Protein kinases ATP-binding region signature. 228 251 IPR017441 GO:0005524
Bva05g01937 550 MobiDBLite consensus disorder prediction 1 82 - -
Bva05g01937 550 SMART serkin_6 222 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g01937 550 PANTHER OS08G0249100 PROTEIN 65 526 - -
Bva05g01937 550 MobiDBLite consensus disorder prediction 109 131 - -
Bva05g01937 550 Gene3D Phosphorylase Kinase; domain 1 184 296 - -
Bva05g01937 550 SUPERFAMILY Protein kinase-like (PK-like) 199 487 IPR011009 -
Bva05g01937 550 MobiDBLite consensus disorder prediction 10 75 - -
Bva05g01937 550 Gene3D Transferase(Phosphotransferase) domain 1 299 515 - -
Bva05g01937 550 Coils Coil 17 64 - -
Bva05g01937 550 ProSiteProfiles Protein kinase domain profile. 222 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g01937 550 MobiDBLite consensus disorder prediction 104 141 - -
Bva05g01937 550 Pfam Protein tyrosine and serine/threonine kinase 225 485 IPR001245 GO:0004672|GO:0006468
Bva05g01937 550 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 65 526 - -
Bva05g01937 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01937 Bva-Chr5 14891321 14894826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01937 175 522 Receptor kinase-like Gene Family AT4G02010 39.237 1.73e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Bva05g01937 PK_Tyr_Ser-Thr 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01937 - - lja:Lj6g3v1915960.1 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01937 05 14891321 14894826 Bva05g01937 05 14891321 14894826 ECH
Bva05g01937 05 14891321 14894826 Bva13g03370 13 23147264 23151140 ECH
Bva05g01937 05 14891321 14894826 Bva13g02883 13 20872645 20875415 ECH