Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01930 ATGGAGGTGCAACCGCATTTCTCCGATGACCCTTCATCAGCTTGGGATTTGGATTGCCTTCTCGATTTCAACTTAGATGACGAATTTGGTGTTTCCTTAGACTGCGATCAAAATTCTGAACTTCCTGAACCGTTGGAACTTCCTCCACAACCACAAGTAGCTCCAGCTGACGAAAAGATCCGCAAGCGAGACCCGAGGTTGACTTGCTCTAATTTTCTTGCAGGTCGGGTCCCATGTGCATGCCCTGAACTCGATGAGAAGCTTGAGGAAGAAGGTTTACCTGGTAAGAAACGGCCTCGCACCATGCGTGCATCGGCTGGGATTGCACGGTGCCAGGTACCTGGGTGCGAGGCAGATATTAGTGAGCTAAAAGGGTATCATAAGAGGCACAGGGTTTGTTTGCGGTGTGCAAATGCTAGTACGGTTATGCTTGATGGGGAGGCGAAGAGATACTGTCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGATGAAGGTAAAAGAAGTTGCAGAAGAAAACTAGAGCGCCATAACAATCGAAGGCGAAGAAAGCCTACTGATTCTAGAACTGCTGTAGAAAATGAAACTCAATCTGTTTTGCAGACTGAGGCTGCCAAATTTGACAGTGAAGTAGGAAAAGACAATTCATATTTAAGCGATGAGATGACTGAAAAAGGAGGTCCACTGGAGCATGAAGATGGCCAAGTTACCACCCAATGTCCAGTTCCTGCCACCCAGAATATCAATAGCGATAGTGGTGTTTCTTTTGACGCTTCTGGTGTAACACAAGTGAATGGtggaaaagataattttaacttttctcaTTCACCGTCATTTTGCAATAACAAGAATGCTTACGCATCCATGTGCCCTACAGGTCGGATCTCTTTTAAGCTTTATGATTGGAATCCAGCAGAGTTTCCCAGAAGGCTTCGACACCAAATATTCCAATGGTTGGCCAGCATGCCTGTTGAGCTGGAGGGATATATTCGCCCTGGATGTACAATCCTGACTGCTTTTATTGCAATGCCAAAGTTTATGTGGATAAATTTACTTGAAGACCCAGTGGACTATGTCCGTGATCTTGTTGTTCCAGGAAAGATGCTATCTGGTAGAGGCAACATCCTAGTTCACCTGAATGATATGATCTTCCGTGTGGTGAAAGATGGATCTTCTGTTGTGAAAGTTGAGTTAAAGGTGAAGGCACCAAGGCTTCACTATGTTCATCCAACATGCTTTGAAGCTGGCAAGCCTATGGAGTTTGTTGCATGTGGAAGTAACTTGCTGCAACCTAAGTTTCGGCTTCTTGTGTCTTTTTCTGGGAAGTATCTGAAGTCTGAGTATTGTGTTGCATCTCCACATAACTCATCTGGGGACAACATTTCTTGCGCTTTTGAACATCAGTTATACAAAATAAGTATCCCCCAAACAGTGCCAAATCTCTTTGGGCCGGCATATATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGACAAAGAAATTTGTTTAGATATCGAGGCATTGCAGCAGAGATTAGATGCATCTCTTCTTTCTAAACAACTTAAATCTGCATCTGCTGGTTCTATCTGCAACTCGTGCAAAGCATCTATACTGAGACATACAGCGTACTCTGACTTACTTTTAGATATATCATGGCTGCTTAAGGATCCTACATCAGAGAATTTTCATAGAGCTATGACAGCTTCGCAAGTTCAAAGATTCTGTTATTTGTTGGACTTTCTGATATTCAATGATTCTTCCATCATTTTGAGGAAAATATTACAGAATTTGACGACTTTGACAGAAAACTTGGAGTCAAGTAACACAATCAGTGGGGTGAGTAATGATGACTTGTTGCTATTGAAGAAATGCATGAATCATGCCAGAGGTGTTCTTGATCTGAAACATCAGAACGGTGGATGTTTACTCATGTACTCTGAAATGAAACAACATACAGTTGCCGAATGCTCATTCCAATATAACATATCATCTACTGTTCCAATCAGCAGTCAGGGTATTGAGGCAAGATCAGATGCTAAGTTGGGAGTACTGAGTAGTCCATATTGTAATGAAAGGATACCTCTTTTGAAAAGTGAGATTATAATGAACATGGATTCTTCAAAACAGTTTCCAAGAAAATCGGGTCATCGATATCTTGCTAGGGGAGTCTTTAGCTCTCGGCCAGCTATCTTCACAATTGCTGCAGTTGCTCTGTGTATTGGGGTATGCGCAGCTCTCCTCCATCCTGGGAAGGTTGGTGAATTTGCAGTAACCATTAGAAGGTGCTTATTTAACCGATA 2324 0.42 MEVQPHFSDDPSSAWDLDCLLDFNLDDEFGVSLDCDQNSELPEPLELPPQPQVAPADEKIRKRDPRLTCSNFLAGRVPCACPELDEKLEEEGLPGKKRPRTMRASAGIARCQVPGCEADISELKGYHKRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTDSRTAVENETQSVLQTEAAKFDSEVGKDNSYLSDEMTEKGGPLEHEDGQVTTQCPVPATQNINSDSGVSFDASGVTQVNGGKDNFNFSHSPSFCNNKNAYASMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTAFIAMPKFMWINLLEDPVDYVRDLVVPGKMLSGRGNILVHLNDMIFRVVKDGSSVVKVELKVKAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKSEYCVASPHNSSGDNISCAFEHQLYKISIPQTVPNLFGPAYIEVENESGLSNFIPVLIGDKEICLDIEALQQRLDASLLSKQLKSASAGSICNSCKASILRHTAYSDLLLDISWLLKDPTSENFHRAMTASQVQRFCYLLDFLIFNDSSIILRKILQNLTTLTENLESSNTISGVSNDDLLLLKKCMNHARGVLDLKHQNGGCLLMYSEMKQHTVAECSFQYNISSTVPISSQGIEARSDAKLGVLSSPYCNERIPLLKSEIIMNMDSSKQFPRKSGHRYLARGVFSSRPAIFTIAAVALCIGVCAALLHPGKVGEFAVTIRRCLFNR 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01930 774 MobiDBLite consensus disorder prediction 208 232 - -
Bva05g01930 774 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 772 IPR044817 GO:0003677
Bva05g01930 774 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 11 772 - -
Bva05g01930 774 Gene3D - 107 172 IPR036893 GO:0003677|GO:0005634
Bva05g01930 774 SUPERFAMILY SBT domain 109 189 IPR036893 GO:0003677|GO:0005634
Bva05g01930 774 MobiDBLite consensus disorder prediction 175 235 - -
Bva05g01930 774 ProSiteProfiles Zinc finger SBP-type profile. 108 185 IPR004333 GO:0003677
Bva05g01930 774 MobiDBLite consensus disorder prediction 40 59 - -
Bva05g01930 774 Pfam SBP domain 111 185 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01930 Bva-Chr5 14852033 14857895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01930 1 768 SBP-box Gene Family AT5G18830 47.566 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva05g01930 SBP 7.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01930 05 14852033 14857895 Bva05g01930 05 14852033 14857895 ECH