Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01922 ATGCAAACAGCTCAGCCAGTCAGTGAAGAAGCATCTCATCATTCACATCAGACCTCTATCCAGTTAAACAAAGAATTACCAGACAATGGATCGAATGGGAGGCGTCCAGATATCTCACTTGAAATTCCACCTAGGCCTTTAGGGTTTGGTAGCACTCGAGGTGGAAGGTTACTAGATCATTCTCCAAGTTTCTCCAAAGGCATTCCATCACCAAGAGGCATTTTGCGAGCTTTGAGCTTCAAAAAGAAAGGTAATGCAGCAGATGGTGAACGAAGCTCCCTCCTTAGTTCAGATCCTAAGACTGCTCCAGACAGTCATAATATGGTTAATTCAACATCTTCATTTGGATGGAAAAGATGTACTTCTCTTCCTGTTAGAcatgcaccaaatctctccccTTCAGTTCCCACGCCCAGTTCTGCTAGGACATATAATGAACAGCCTAAGCCGCGTAAAGAGGTTGCTGGTTCTAAGGTTTCAAGGTCACTCTCTGTATCTGAACGGAATGTTGTTATAGTAAGATCTTTGTCTTTTCCAGCCCATGGTGGACATGAACAAGAAGATCCAAATGATgATCAAATAACTCCTGTACCAGTAGAAGGCCCAGATGAAGAAATCCCTGAAGAGGAAGCAGTGTGCAGAATATGTCTTGATGTCTGTGATGAAAGGAATACCCTTAAAATGGAATGCAGTTGCAAAGGTGCCCTGAGACTGGTGCATGAAGAATGTGCTATCAAATGGTTTAGCACGAAAGGAAATAAGAAATGTGAGGTGTGTGGGAATGAGGTCCAGAATTTACCTGTAGCTTTGCTTCGTGTGTCCAGCACTGCTCAAAGGGAAAGCAGACAAGTGCAGGGTCAACAGAACTTGCATTCAGAATCAATCAGTGTCTGGCAAGACTTTGTGGTGCTCGTCTTAATAAGCACAATATGCTACTTTTTCTTCCTCGAGCAATTACTGCTTCGTGACTTGAAGACCCGAGCAATCATCATAGCAGCACCATTCGCCTTTACCTTGGGACTCCTGGCGTCTATCTTTGCAGTTGTTTTGGcaataagagaatatatatggaCATACGCTGCTCTCGAGTTTGCTCTGGTGGCTCTAACCGTGCACCTCTTCTATACTATGTTGCATTTGAATGCTATCTATACAATACTACTCTCTACAGTTTTGGGATTTGGAATGGCTATGAGTATCAACTATGCGTATCTCCAGTATGTTTCTTGGCGATTTCAAGTCTCACAGGACACTGACCCAGCATG 1265 0.4221 MQTAQPVSEEASHHSHQTSIQLNKELPDNGSNGRRPDISLEIPPRPLGFGSTRGGRLLDHSPSFSKGIPSPRGILRALSFKKKGNAADGERSSLLSSDPKTAPDSHNMVNSTSSFGWKRCTSLPVRHAPNLSPSVPTPSSARTYNEQPKPRKEVAGSKVSRSLSVSERNVVIVRSLSFPAHGGHEQEDPNDDQITPVPVEGPDEEIPEEEAVCRICLDVCDERNTLKMECSCKGALRLVHEECAIKWFSTKGNKKCEVCGNEVQNLPVALLRVSSTAQRESRQVQGQQNLHSESISVWQDFVVLVLISTICYFFFLEQLLLRDLKTRAIIIAAPFAFTLGLLASIFAVVLAIREYIWTYAALEFALVALTVHLFYTMLHLNAIYTILLSTVLGFGMAMSINYAYLQYVSWRFQVSQDTDPA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01922 421 PANTHER OS02G0165000 PROTEIN 4 420 - -
Bva05g01922 421 SMART ringv_2 212 260 IPR011016 GO:0008270
Bva05g01922 421 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Bva05g01922 421 CDD RING_CH-C4HC3_MARCH 213 260 - -
Bva05g01922 421 MobiDBLite consensus disorder prediction 90 115 - -
Bva05g01922 421 MobiDBLite consensus disorder prediction 127 160 - -
Bva05g01922 421 PANTHER ZINC FINGER PROTEIN 4 420 - -
Bva05g01922 421 MobiDBLite consensus disorder prediction 1 28 - -
Bva05g01922 421 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Bva05g01922 421 SUPERFAMILY RING/U-box 209 263 - -
Bva05g01922 421 MobiDBLite consensus disorder prediction 1 115 - -
Bva05g01922 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 267 IPR013083 -
Bva05g01922 421 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01922 Bva-Chr5 14822912 14826696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01922 226 322 C3H Transcription Factor Family AT5G59000 32.990 3.58e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01922 - - gmx:100777100 608.216