Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01909 ATGCCTATAATTCGGAGCTTAATTCAGGAAATGAGATCGAGGTCGCAACGCGTGGTCCGAGACGGCTCGATGGAGGAGGTGATAACAGATGGCATGAAGCACAGTTGCTGGGCTAACATGCCGCAGGAGCTTCTCAGGGAGGTGCTGATGAGGATTGAAGCATCGGAAATATCTTGGCCGCCGCGGAAGAGTGTGGTAGTTTGTGCCGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGACCCCTGAACTTTCCGCTAAGATAACGTTTCCGATCTCTGTCAAGCAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGTTTTATAAAGCGCAACCGGTCCACCCAAACGTACTATTTGTTTCTCAATTTAACTAATGCATTAGCTGATGACGGGAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATAATCTCACTGAATGCTGATGATATGTCAAAGGGAAGCAATGCTTATGTGGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACCATATATGATGGCCAGCCACCTCATGCAGGGGCAAAGATAACTAAAAGTCGCTCCACAAGGATGGTGAATCCGAAACAAGTTTCACCCAGGGTCCCTACCGGTAATTATCCAGTGGCCCACATCTCATATGAATTAAACGTGCTTGGCTCCAGGGGGCCTCGGAGAATGCACTGCACCATGGATGCCATTCCTGCCTCGGCAATAGAACCAGGAGGAGTAGCCCCTACACAGACTGAGTTTTCTTACAGCAACATTGATATGTTTCCTTCATTCCCATTTTTCCGGTCAAAATCAAATCGTGTAGAAAACTCCCTTTCTGGACCTCTGGGAGATCGAAAAGATGGGTTAAAAACTTTCAGCTGGTGGCTTCGCCACCAGAAAATGCACCTGCTGGACCAGAACACGAGAAGATTATCCTCCAATTCGGAAAAGTTGGAAAAGATTTGTTTACAATGGACTACCGTTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAACTTTGATACCAAGATTGCTTGTGAATGACGCAAGTATGAACAGCTATCATCCCAATAACATTGCTGATTGCGATCTTAAGTGCCATTTTGGTTCTGGAGCAGTATGGTTCACTTTGTGGGAAGTATTGGATGAAACTGTTGGACAAGCTGATTG 1208 0.4694 MPIIRSLIQEMRSRSQRVVRDGSMEEVITDGMKHSCWANMPQELLREVLMRIEASEISWPPRKSVVVCAGVCRSWREITKEIVKTPELSAKITFPISVKQPGPREHLLQCFIKRNRSTQTYYLFLNLTNALADDGKFLLAARKCRRPTCTDYIISLNADDMSKGSNAYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRMVNPKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCTMDAIPASAIEPGGVAPTQTEFSYSNIDMFPSFPFFRSKSNRVENSLSGPLGDRKDGLKTFSWWLRHQKMHLLDQNTRRLSSNSEKLEKICLQWTTVTLSQHFRHLQSASATLIPRLLVNDASMNSYHPNNIADCDLKCHFGSGAVWFTLWEVLDETVGQAD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01909 402 SUPERFAMILY F-box domain 30 80 IPR036047 GO:0005515
Bva05g01909 402 Pfam Tub family 98 285 IPR000007 -
Bva05g01909 402 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Bva05g01909 402 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Bva05g01909 402 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Bva05g01909 402 SUPERFAMILY Tubby C-terminal domain-like 86 267 IPR025659 -
Bva05g01909 402 Gene3D Tubby Protein; Chain A 97 327 IPR025659 -
Bva05g01909 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 6 321 - -
Bva05g01909 402 Pfam F-box domain 37 84 IPR001810 GO:0005515
Bva05g01909 402 PANTHER TUBBY-RELATED 6 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01909 Bva-Chr5 14737936 14741714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01909 12 298 TUB Transcription Factor Family AT2G47900 70.690 5.43e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva05g01909 Tub 3.8e-58 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01909 K19600 - gmx:100815464 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01909 05 14737936 14741714 Bva05g01909 05 14737936 14741714 ECH