Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01884 ATGGAGTCTCTTGTCAAAGACATGGGGTGGAAGTCTGTGAAACTTGCCAAAAATGCCATAATTTTCACATTAAGTTTGGATAAAAGAATTATCCCGAGGGCTTCTGTCTTGCAATTTCTTCAAGCAAGGGGTTTAATTAAGGATGCTCAACTTGCTAGATCATTTGCTTTGACTGAAAAGGTGTTCCTGCAGAAATTTGTGATTGGTTTTGAGGATAGAGCTCCTGAGTTGTTGAAGGTAGTTAGGGTTCCTTCGATTGCGTTCTGTTGCTCTTTTCGAATCGCGGTCAGTTTACTCCAGTGCTGCTCAAATCTGAATGTCATGTTTAATTCATATCGCAAAGCCTTTCTCTTCCTCAAAATTGGTATCTTAAGGCCCTCGTCCGCCCCAAAACTCTCCATCATTCTACAGCTTAATCATTCAACATTTTCTCTGAAATACAGCACGAGTACCTCAGATTCACAACCCTTTGCAGTGGATTACCTCATAAAAAAGTTTGGGTTCTCACCGGAAACTGCCGTATCTGCGGCAAAGCATGTCCATTTTGACAACTCTAAGAAGCCCGATTCAGTTGTTACCTTCTTTAAAAGCCATGGTTTTTCAGATGCCCAGATATCAAAAATCattagaaagcaaccaaggcTGATCACATTCAATCCTGACAAAACCTTTCTGCCCAAATTACAGTTTTTTCAGTCTAAGGGTGCTTCAAGATCCGATCTTATCCGAATATTCACTACAGAATCGACATTGTTAGCTCGAAGCTTAGAGGGCTGTTTAATCCCATTTTATGAGTCATTTAGAAGATTCTATCTGTCTGATCAATGTATCACTGATATAATAAAACGCTATGCGCATATTGTTTGTCATGCGAGTTGGACAGCACATAATGTTCAAGTGTTGCTTGATAATGGTATGCCAGACACCAAGATCGGCTTTTTACTTCGCAAATGGCCTCGCACAGTGAACATGCAATCGGATATTTTCAAAAAGGCAGTGGATGATCTGAAGGAAATGGGAATAAATCCTTCAAAATCAACTTTCATTGTAGCATTGGTTGCTAAAAGTACAGGTAAAACAACTTGGGAAAGGAAGATTGATGTGTTTAAGAGATGGGGTTGGTCTGAAGAAGTAATTGTTTCCTCATTTACAAAGGTTCCTTGGATTATGCTAGTATCTGAAGCTAAACTTGCAGCAGTGATGGATTATTTTGTTACCTGCTTGGGTTGGGACTCCATGTTGCTTGCCAAATATCCCAATATTTTCTCACGTAGTTTGGAGAAATCGATTATCCCAAGGCATTCTGTTCTGCAAGTTCTTCTATCAAGAGACTTAATTAAAGATGATAAAtcaatttcttctcctttcatAGTGAGTGAAAAAGTATTCCGGCAGAGATACGTGAATCGTTTCAAGGAGGAAGCTCCTGAGCTATTGAAGCTGTACGAAGAAAAACGCAATCTCTCCCAATAGATTAGGTCCTAGGGTGTAACTGACTTTACAAACAAGCACTCTGCTATGTGTCATTGCTGAATGCTGACACACGCGTGATACTTGTTGTCATAGTTTTGTTTGTAAGTGAATGAAGAGG 1591 0.3878 MESLVKDMGWKSVKLAKNAIIFTLSLDKRIIPRASVLQFLQARGLIKDAQLARSFALTEKVFLQKFVIGFEDRAPELLKVVRVPSIAFCCSFRIAVSLLQCCSNLNVMFNSYRKAFLFLKIGILRPSSAPKLSIILQLNHSTFSLKYSTSTSDSQPFAVDYLIKKFGFSPETAVSAAKHVHFDNSKKPDSVVTFFKSHGFSDAQISKIIRKQPRLITFNPDKTFLPKLQFFQSKGASRSDLIRIFTTESTLLARSLEGCLIPFYESFRRFYLSDQCITDIIKRYAHIVCHASWTAHNVQVLLDNGMPDTKIGFLLRKWPRTVNMQSDIFKKAVDDLKEMGINPSKSTFIVALVAKSTGKTTWERKIDVFKRWGWSEEVIVSSFTKVPWIMLVSEAKLAAVMDYFVTCLGWDSMLLAKYPNIFSRSLEKSIIPRHSVLQVLLSRDLIKDDKSISSPFIVSEKVFRQRYVNRFKEEAPELLKLYEEKRNLSQIRSGVTDFTNKHSAMCHCMLTHAYLLSFCLVNE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01884 523 PANTHER CGI-12 PROTEIN-RELATED 1 82 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 PANTHER CGI-12 PROTEIN-RELATED 140 488 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 Pfam mTERF 193 286 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 Pfam mTERF 295 463 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 Gene3D Transcription termination factor 3, mitochondrial 1 71 IPR038538 -
Bva05g01884 523 Gene3D Transcription termination factor 3, mitochondrial 255 480 IPR038538 -
Bva05g01884 523 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 140 488 - -
Bva05g01884 523 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 1 82 - -
Bva05g01884 523 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 SMART mt_12 242 273 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 SMART mt_12 312 342 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 SMART mt_12 412 444 IPR003690 GO:0003690|GO:0006355
Bva05g01884 523 SMART mt_12 12 46 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01884 Bva-Chr5 14591342 14594269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g01884 mTERF 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01884 K15032 - vvi:100256384 323.939