Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01883 ATGATCAGAAGGTGTCCAAGGTTGCTTCTATGCAATCCGGTGAAAACCATTACACCCAAGATAGAATTTTTCCAGTCCAAAGTTGCTTCAAGTTCCGATATTGCAACCATCGTGAAGGTGAGTCCCTGGATCTTGCGAAGAAGCTTAAAGAACTGTTTAATTCCTTGTTATGACTTTCTGAGAGGATATCATCATTCTGATAAGAAAACAATTACATCTATAAGACGCTGTCCCAACATGCTTCGTagtgataaaataattcaaaatgtCAAATGCTTGGTTGAAATCGGGTTGCCTGAATCAGGCATTGCTAGATTACTTCATTGTTGGCCTAGATCACTGGCCTTTAATGTAGTTAAGTTTAAAATGGCTATCAAGAAAGTAGAAGATCTGGGATTTGATCCTTCAAGATATTCCTTTGCTCCTGTATTCTATGCCTTAACTGTAATAAGCAAATCCACCATGTA 467 0.3704 MIRRCPRLLLCNPVKTITPKIEFFQSKVASSSDIATIVKVSPWILRRSLKNCLIPCYDFLRGYHHSDKKTITSIRRCPNMLRSDKIIQNVKCLVEIGLPESGIARLLHCWPRSLAFNVVKFKMAIKKVEDLGFDPSRYSFAPVFYALTVISKSTM 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01883 155 SMART mt_12 71 99 IPR003690 GO:0003690|GO:0006355
Bva05g01883 155 SMART mt_12 35 67 IPR003690 GO:0003690|GO:0006355
Bva05g01883 155 SMART mt_12 1 30 IPR003690 GO:0003690|GO:0006355
Bva05g01883 155 SMART mt_12 104 134 IPR003690 GO:0003690|GO:0006355
Bva05g01883 155 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 1 155 - -
Bva05g01883 155 Pfam mTERF 2 134 IPR003690 GO:0003690|GO:0006355
Bva05g01883 155 Gene3D Transcription termination factor 3, mitochondrial 1 149 IPR038538 -
Bva05g01883 155 PANTHER CGI-12 PROTEIN-RELATED 1 155 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01883 Bva-Chr5 14590428 14591367 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g01883 mTERF 4.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01883 K15032 - qsu:111987836 127.872