Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01881 ATGTCCACCTCTAGGACCTCAGAGAAACCCTTCAAAGGATTTGAACCCAACCAAACCCAGATGGGTTTAGCTCCTATTCAACATAGCACATCTCCTTCTGGGGAGAGAAGAGGGAGAAGAAGGCAAGCTGAGCCAGGGAGGTTCCTTGGAGTCAGAAGGCGCCCTTGGGGTAGATATGCTGCAGAAATCAGAGACCCCACAACTAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGTAGCCAGGCAAGAACAAACTTTGTTTACTCTGACAGCACCAATTTTCACACTCTTCTTACTCCTATGGATGTTCAAGCACTCGTGCCAGCATCTCAGTTCTTCGGTAACCCCCAGAGCAAGCCgccaaaaaaccaaaatagcCCTCTTACCCAGCTTGATTCTTCTAGTTCTTCCTTCATTGAGAACCCCAGCCAATTGAAAAATGACACCTGTGCTGAACCTGCATATGGGTCATCAGCAGCAGCTCAggataatgatgatgatgatgataatttcttcttctccaatgATTCTAACTCAGGCTACTTGGAATGCATAGTTTCTTCAAGCGCAAACTCCAGAAAGAGCAATGCAAGTGCTTCGAATGAGCAAAAGGTTAGCTCTATCAACACAAACGCCATGGGTGGATTCTCTCAGGAATCCTTGGACATGTCAGCAATGACCTTTTGCTTTGGAGATTATCCTTATAGAAATGAACTCAGTCAAGGATTATGGGATAACCAGCAGGCATGGGATAGGAACTGCAATGATCTTTCTGCCATAATCAATAACCCATTAAGGCAGGAAGATGAATGCATGGGTTCTTTATGTCCCTTTAATGGCAGTCCAAGCTATGGCCTAATGACTCAAGCAGCAGTTTCCTCAACAACCTGCACTCCATCACTTCCTCCTTTTGGGGATGTTGACTTGGGCTATTA 986 0.4331 MSTSRTSEKPFKGFEPNQTQMGLAPIQHSTSPSGERRGRRRQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDSTNFHTLLTPMDVQALVPASQFFGNPQSKPPKNQNSPLTQLDSSSSSFIENPSQLKNDTCAEPAYGSSAAAQDNDDDDDNFFFSNDSNSGYLECIVSSSANSRKSNASASNEQKVSSINTNAMGGFSQESLDMSAMTFCFGDYPYRNELSQGLWDNQQAWDRNCNDLSAIINNPLRQEDECMGSLCPFNGSPSYGLMTQAAVSSTTCTPSLPPFGDVDLGY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01881 328 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 MobiDBLite consensus disorder prediction 1 48 - -
Bva05g01881 328 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 328 - -
Bva05g01881 328 MobiDBLite consensus disorder prediction 33 48 - -
Bva05g01881 328 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Bva05g01881 328 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 MobiDBLite consensus disorder prediction 128 189 - -
Bva05g01881 328 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Bva05g01881 328 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 328 - -
Bva05g01881 328 MobiDBLite consensus disorder prediction 1 32 - -
Bva05g01881 328 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Bva05g01881 328 MobiDBLite consensus disorder prediction 128 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01881 Bva-Chr5 14580186 14581172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01881 1 324 AP2-EREBP Transcription Factor Family AT5G18560 39.678 4.37e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva05g01881 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01881 - - gmx:100812047 362.459