Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01880 ATGGAGCGGTACGGCCGGGCTAGTGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACTGGCGAAGGTGGCGAAACTGGACTGGAAGAGCCTATGTGGCAATTGGGATTGGGTGGTGGTGAATCGTATCCGCAGCGGCCCGATGAGGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGTGGGTATGGCTCCCGTTGTCGGTTCAATCATCCCCGTGACCGTGGCGCGGTTATAGGAGCTGCAAGGACTGGAGGAGAGTATCCAGAGCGCGTAGGTCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTGCTTCCTGCAAGTACCACCATCCTAGGCAGGGAGGAGGCGCAGTTGCTTCTATGTCACTAAATTATTATGGATATCCATTGAGACCGGGTGAAAAAGAGTGCTCCTATTATGTGAAAATGGGGCAATGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGTTGGTGTCCCACTTCCAGCACCATCACCAGTTCCCCCTGTTTCACCTCTGCCTGTACCAGTACCATCGCCAATATATTCCACTGTACAGCCTCCATCTGGCCCTTCATCCCAACAATACGGTGTAATGGTTGCAAGGCCACCTCTATTACCTGGTTCATTCGTCCAAGGACCCTATGGACCAGTATTAGTTTCCCCTGCTATGGTCCCTTTCTCAGGTTGGGATCCTTATCAGACTCCTCCAAGCCCTGTAGCTCCTTCTAGTGCTCCTTCACACATTAGTTCAACACAGCTTTACGGCATTGCCCAGCTACATTCACCTGCACCTGCATATGCTGGACCTTATCAACCTTCAGGATCCTCAGTTGGTCCTTCAGGTAGTAGTCAGAAGGAGTATTCATTTCCAGAAAGACCTGGTCAACCAGAATGCCAATATTACATGAAAACAGGAGACTGTAAATTTGGTCCATCATGTAAATATCATCATCCTCCTGAACTAATTGCGCCAAAAATGAATGTGGTCCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCGCCACCTTGCACCCATTATACACAACGTGGGGTATGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATGGGAGCACTGAGTTATAGCCCATCTGCTTCTTCGCTGGCTGATATGCCTGTTGCACCGTATCCTGTGGGTTCATCAATGGGCACTCTTGccccatcatcatcatcctcaGAGTTGCGGCCCGAACTTGTCTCAGGATCCAGCAAGGAGTCTGTCTCATTCAGAATGTCTTCATCGATGAGCACATCGACCGGATCAGTCGGCTTGACCTTGTCAACCGGTGGATCCATTTCTCAGTCAAGTACACAATCATCTTCTCAGAATTCTGGTCCTCTAGTGACGACCACCACAAGCAGCTCGGTCTCTCACACCTCAAGCTA 1442 0.4924 MERYGRASEGSQSDPSPEWTGEGGETGLEEPMWQLGLGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQGGGAVASMSLNYYGYPLRPGEKECSYYVKMGQCKFGATCKFHHPQPVGVPLPAPSPVPPVSPLPVPVPSPIYSTVQPPSGPSSQQYGVMVARPPLLPGSFVQGPYGPVLVSPAMVPFSGWDPYQTPPSPVAPSSAPSHISSTQLYGIAQLHSPAPAYAGPYQPSGSSVGPSGSSQKEYSFPERPGQPECQYYMKTGDCKFGPSCKYHHPPELIAPKMNVVLSPAGLPLRPGAPPCTHYTQRGVCKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELVSGSSKESVSFRMSSSMSTSTGSVGLTLSTGGSISQSSTQSSSQNSGPLVTTTTSSSVSHTSS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01880 480 Gene3D - 124 170 - -
Bva05g01880 480 PANTHER PROTEIN PHOSPHATASE RELATED 1 472 - -
Bva05g01880 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Bva05g01880 480 MobiDBLite consensus disorder prediction 1 42 - -
Bva05g01880 480 SUPERFAMILY CCCH zinc finger 352 378 IPR036855 GO:0046872
Bva05g01880 480 SUPERFAMILY CCCH zinc finger 139 164 IPR036855 GO:0046872
Bva05g01880 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Bva05g01880 480 Gene3D - 44 121 - -
Bva05g01880 480 Gene3D - 300 387 - -
Bva05g01880 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Bva05g01880 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Bva05g01880 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bva05g01880 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Bva05g01880 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 375 IPR000571 GO:0046872
Bva05g01880 480 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bva05g01880 480 MobiDBLite consensus disorder prediction 275 301 - -
Bva05g01880 480 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Bva05g01880 480 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872
Bva05g01880 480 MobiDBLite consensus disorder prediction 283 299 - -
Bva05g01880 480 MobiDBLite consensus disorder prediction 401 480 - -
Bva05g01880 480 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 472 - -
Bva05g01880 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bva05g01880 480 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Bva05g01880 480 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bva05g01880 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bva05g01880 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Bva05g01880 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Bva05g01880 480 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Bva05g01880 480 SMART c3hfinal6 137 164 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01880 Bva-Chr5 14573052 14578774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01880 1 444 C2H2 Transcription Factor Family AT5G18550 57.952 1.18e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g01880 zf-CCCH 2.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01880 - - gmx:100789405 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01880 05 14573052 14578774 Bva05g01880 05 14573052 14578774 ECH