Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01879 ATGTTTAGCTCGCAACGCCGCAAAGCCCTTCAATGCTTGAAGGGTATCGTAACAATAGCAGCAAACCGCCCTTTCTCTTTGAATTTCAGCACAGGCACTGCCGATAAAACGTCCTTTATAGCGACCTACCTCACTAACAATGGGTTCTCGCCAGCGGCTGCTTTGTATGTTTCTAAGCGCGTTCGTTTTGAGACCTCCACAAAGCCGGATTCAGTTCTCAACTTTTTCAGAAACAATGATTTCTCAGACTCTCAGCTATACAGTCTCATCAGGAAGGGACCATGGCTGCTTTCATGCGATCCCAACAATATGATTCTGcccaagtttgaatttttacgCTCTAAAGGTGCTTCTAGCTCTGACATTGCTGAAATGGTGAGTTTAGCTCCGTATTTCCTAAAAAGAAGCTTGGAGAATCACATAATCCCCCAATATGAATTGGTGAAAGGGTTCTTCCAAACTGATAAGGCGACCATACTTTGTTTAAAACATTCTGCGAATTTACTTTATATCAGTTATGTGGCACCTAATATCCAATTGTTGCTTGATTATGGGGTGTCTGATTCAGCCATTGCTAGATTGATTCGTTGTCGCCCCTCTATGTTGTTGAGGGTGCAGTCGAGTAAATTGATGGAATCCATGgaggaaataaagaaattggGAATTAATTCTTGCAAAATACAGTTTCTTTGGGCATTAATGGCTAAAACGACTTTGAGTGAATCTAAGTGGGATGCAAAAGTTGACGCTTTTAAGAAGTGGGGTTGGTCTGAAGAAACGATTTTGGAAGTCTTTAAGAGAGATCCACTCTTAATGTTAGCATCCTTGAATAGAATTGACGCAGTGATGACATTGTGGGTCAACCAGTTGGGCTGGAATTCTTTGGAACTTGTTGAAGGGCAACGAGTTTTTAGATATAGTTTGGAGAAAAGAATTATCCCAAGGGCTTCAGTTTTGCACTTTCTTCTCTCGAAAGGTTTGATAAGCAAGAAAACCAACAAACTTACAGCGTTCGATCTTACTGAAAAGCTGTTCCTACAAAGGTTCGTGCACTGTTTTAAGGAGGAAAGTTCTCAAATATTAAAGCTGTACGAGGAAAAGATGAATCTTAAGAATAAAAAGGAGAATGGTAGCAGGTA 1139 0.3951 MFSSQRRKALQCLKGIVTIAANRPFSLNFSTGTADKTSFIATYLTNNGFSPAAALYVSKRVRFETSTKPDSVLNFFRNNDFSDSQLYSLIRKGPWLLSCDPNNMILPKFEFLRSKGASSSDIAEMVSLAPYFLKRSLENHIIPQYELVKGFFQTDKATILCLKHSANLLYISYVAPNIQLLLDYGVSDSAIARLIRCRPSMLLRVQSSKLMESMEEIKKLGINSCKIQFLWALMAKTTLSESKWDAKVDAFKKWGWSEETILEVFKRDPLLMLASLNRIDAVMTLWVNQLGWNSLELVEGQRVFRYSLEKRIIPRASVLHFLLSKGLISKKTNKLTAFDLTEKLFLQRFVHCFKEESSQILKLYEEKMNLKNKKENGSR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01879 379 Pfam mTERF 73 236 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 Pfam mTERF 176 341 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 Gene3D Transcription termination factor 3, mitochondrial 159 363 IPR038538 -
Bva05g01879 379 PANTHER CGI-12 PROTEIN-RELATED 24 372 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 SMART mt_12 192 223 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Bva05g01879 379 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01879 Bva-Chr5 14566534 14569258 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g01879 mTERF 6.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01879 K15032 - gmx:102667698 324.324