Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01878 ATGTTTAGCTCGCAACGCCGCAAAGCCTTTCAGTACTTGAAGGAAAACCTAACATCATCAGCAAACTTGCTTTTTTCTCTGAATTTCAGCACAAGCACTGCCGCTGATAAAACATCCTTTGCAGTGACCTACCTCATCAACAATGGGTTCTCACCAGAAGCTGCTTTGCAGGTTTCTAAGCGAGCTCGTTTCAAAACCTCGACAAAGCCGGATTCAGTTCTCAACTTTTTCAGAAACAATGGTTTCTCCGACTCTCAGCTATACAGTCTCATCAGGAAGGGACCATGGCTGCTATCATGCGACCCCAGCAAAAGAATTCTGcccaagtttgaatttttactcTCTAAAGGTGCTTCTAGCTCTGACATTGTTCACATGGTGAGTTCAGCTCCGAATTTCCTAAGAAGAAGCTTGGAGAATCACATAATCCCCCGCTATGAATTGGTGAAGAGGTTCGTCCAAACTGATACGGCGACCATACTTTGTTTAAGACATTTTACGAATTTACTTTATATCAGTTATATGGCACCTAATATCCAATTGTTACTGGATAATGGGGTGACCGAGCCAATCATTTCTAGAATGATTCGTTCGCGCCCCAGTATGTTGTCAGGCATGCCCTCGAGTGACTTCACGAAATCGATCGAGGAAGTAAAGAAATTGAGATTTGATACTTGCAAAGTACAATTTCTCTGGGCATTGAAGGCTAAAGGGGCTATGAGTAAATCTAAGTGGGATGCCAAAGTTGATGCCTTTAAGAAGTGGGGTTGGTCTGAAGAAATGGTTTTGGAAGCCTTTAAGAGGGATCCGCTCTGCATGTTAGCATCCTTGGATAGAATTGACGCAGTGATGAGTTTTTGGGTCAACCAATTAGGCTGGGACTCTTTGGTTCTTGCTGAAAGACCTTTAGTTTTTAGATATAGTTTTGAGAAAAGAATTGTTCCAAGGGCTTCTGTTTTGCACTTTCTTCTCTCAGAAGGTTTGATAAGCAAGAAAGCCAACAAAATTGCAGCATTTGATCTTACTGAAATGCTTTTCCTGCAAAAGTATGTGCAATGTTTTGAGGAGAAAAGTTCTCAAATATTAAAGCTATATGAGGAGAAGTTGAATCTTaagcataaaaagaagaatgggAGCATTTA 1142 0.3984 MFSSQRRKAFQYLKENLTSSANLLFSLNFSTSTAADKTSFAVTYLINNGFSPEAALQVSKRARFKTSTKPDSVLNFFRNNGFSDSQLYSLIRKGPWLLSCDPSKRILPKFEFLLSKGASSSDIVHMVSSAPNFLRRSLENHIIPRYELVKRFVQTDTATILCLRHFTNLLYISYMAPNIQLLLDNGVTEPIISRMIRSRPSMLSGMPSSDFTKSIEEVKKLRFDTCKVQFLWALKAKGAMSKSKWDAKVDAFKKWGWSEEMVLEAFKRDPLCMLASLDRIDAVMSFWVNQLGWDSLVLAERPLVFRYSFEKRIVPRASVLHFLLSEGLISKKANKIAAFDLTEMLFLQKYVQCFEEKSSQILKLYEEKLNLKHKKKNGSI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01878 380 PANTHER CGI-12 PROTEIN-RELATED 13 373 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 SMART mt_12 193 224 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 Pfam mTERF 74 270 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 Pfam mTERF 240 331 IPR003690 GO:0003690|GO:0006355
Bva05g01878 380 Gene3D Transcription termination factor 3, mitochondrial 152 363 IPR038538 -
Bva05g01878 380 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 13 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01878 Bva-Chr5 14564894 14566294 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g01878 mTERF 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01878 K15032 - gmx:102663414 329.331