Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01874 ATGTTTAATTCATATCGCAAAGCCTTCCTCTACCTcagtaatgttattttaagaaCCTCGACGACCCCAAAACTCCCCATCATTCTACAGTCCAATCCATCAACATTTTCTCTGAAATACAGCACGAGCACCTCAGATTCACAATCCTTTACAGTGGATTACCTCATAAAAAAGTTTGGATTCTCACCGGAAACTGCCTTATCGGCCACAAAGCGCGTTCATTTTGACAACTCTAAGAAGCCCGATTCAGTGATCACCTTGTTTAAAAGCCATGGTTTTTCAAACGCCCAGATATCCAACATCATTAGACGGGAGCCAAATCTGCTCATATCCGATCCTGACAAAACCATTCTGCccaaatttgagttttttagGTCAAAGGGTGCTTCAAGATCCGACATTATCCAAATATTTACTGCAGATCCGAGTTTGTTAGCTCGAAGCTTAGAGGGTTGTTTTATCCCTTTTTATGAGTCTTTGAAAAGATTCCTCCTGTCTGATCAATGCATCACTAAGACAGTAAAATACTACACGCATATTGTTGGTCATTCTCATCGCACAACACATAATGTTCAAGTGTTGCTTGATAATGGTATGCCtgacaaaaaaattgcttttttaCTTAGTCATTGGCCTCGGGCGGTGGACATGCAAACGGATGTCTTCAAAAAGGTAGTGGATGATTTAAAGGAGTTGGGAATGGAACCTtctaaatcaatttttcttgtggCATTGCTGGCTAAAAGTTCAGGCAAAACAACTTGGGAAAGGAAGATTGATTTGTTCAAGAGATGGGGTTGGTCGGAAGAAGTAATTGTTTCAACATTTACAAAGTATCCTTGGATCATGCTTGTATCTGAAGGTAAACTTGCAGCAGTAAAGGATTATTCTGTTACCCGCATGGGCTGGGACTCTATGTTGCTTGCCAGATATCCCAATATTTTCTCGCGTAGTTTGGAGAAATCGATTATTCCAAGGCATTCAGTTCTGCAAGTTCTTGTATCAAGAGGCCTAATTGAAGATGATAAATCATTTTCTCCATTCCGAGCAAGTGAAAAGGCCTTCCGGCAGAGATATGTGAATTGTTTCAAGGAGGAAGCTCCTGAGCTATTGAAGCTGTACGAAGAAAAACGCAATCTTTCCCAATA 1148 0.3859 MFNSYRKAFLYLSNVILRTSTTPKLPIILQSNPSTFSLKYSTSTSDSQSFTVDYLIKKFGFSPETALSATKRVHFDNSKKPDSVITLFKSHGFSNAQISNIIRREPNLLISDPDKTILPKFEFFRSKGASRSDIIQIFTADPSLLARSLEGCFIPFYESLKRFLLSDQCITKTVKYYTHIVGHSHRTTHNVQVLLDNGMPDKKIAFLLSHWPRAVDMQTDVFKKVVDDLKELGMEPSKSIFLVALLAKSSGKTTWERKIDLFKRWGWSEEVIVSTFTKYPWIMLVSEGKLAAVKDYSVTRMGWDSMLLARYPNIFSRSLEKSIIPRHSVLQVLVSRGLIEDDKSFSPFRASEKAFRQRYVNCFKEEAPELLKLYEEKRNLSQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01874 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 33 379 - -
Bva05g01874 382 PANTHER CGI-12 PROTEIN-RELATED 33 379 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 Pfam mTERF 250 355 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 Pfam mTERF 86 289 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 Gene3D Transcription termination factor 3, mitochondrial 153 373 IPR038538 -
Bva05g01874 382 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 19 62 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Bva05g01874 382 SMART mt_12 171 200 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01874 Bva-Chr5 14546029 14548081 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Bva05g01874 mTERF 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01874 K15032 - vvi:100256384 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01874 05 14546029 14548081 Bva05g01874 05 14546029 14548081 ECH