Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01824 ATGGGTGACTCACCTCCGCGCAGGGAGAACATCGGTCCTGATTCAAATGAAGGAAAGAGCTATGCCCTTAGCGGCAAGATAATGCTGAGCGCGATTGTCATTTTGTTCTTCGTCGTCCTTCTGATGGTGTGCCTCCACCTCTATGCGCGCTGGTACCTTTCCCGCGCTCGCCGCCGCCAAATCCCCCGTAGTCGCAACTACCGCCGTGCCCGGCTTGTGTTCTACGATGATCATGCCATCCCCGGTGCCGGCACCGTTGTCTCCCCCGGTCTCGAGGATTCCGTGATTAAGTCTCTCCCTGTTTTTGCTTACTCCTCCAAGACCCACTCGGAACCCGTGGAATGTGCCGTTTGCTTGTCGGAATTTGAAGATGGAGAAAAGGGTCGGATTTTGCCCAAGTGCAATCATAGCTTTCATATTGACTGTATCGATATGTGGTTTCTTTCCCACTCCACGTGCCCGCTTTGCAGAGCTCCCGTTGAAGCACCTTCGACAGTGGACGAAGTGGTAATCACTGTGAGTGAACCGGGTTCGGGTTCGGGTTCGAGTTCTGGGTTGTGTGCGGAATGTGAAAACGAAGGCGAGGAGAGAGACCGAAACGATCTGGCAATttcttcgtcttcttcttCCGTCGGGCTCAGGCGGAAGCCATCGTTTGCGGGCGTGACCATTGAGGCGCCCGGCGCCGGTAGGAACGAGAGCTTTGACGAGTCGAATTGTGACTCGCCGTCGACTCAGTCGTCGTTTCGGTCACCGGTGAGTCGTATGCTGTCGTTTAAGAGAATGCTTAGCAGAGATCGAAAAGCAggcatttttccttcttcaggTATCCATGGGGATTGTAGCTCCACGACCACCACGGACATCGAACTGGAGCGAGGAGGGCGAGAAGAGACACAGGGACTTGGTGACGTGGGACCTGTGCAACAAAGATCATATCCAAAACCATCAGCAGCCGAGTG 962 0.5281 MGDSPPRRENIGPDSNEGKSYALSGKIMLSAIVILFFVVLLMVCLHLYARWYLSRARRRQIPRSRNYRRARLVFYDDHAIPGAGTVVSPGLEDSVIKSLPVFAYSSKTHSEPVECAVCLSEFEDGEKGRILPKCNHSFHIDCIDMWFLSHSTCPLCRAPVEAPSTVDEVVITVSEPGSGSGSSSGLCAECENEGEERDRNDLAISSSSSSVGLRRKPSFAGVTIEAPGAGRNESFDESNCDSPSTQSSFRSPVSRMLSFKRMLSRDRKAGIFPSSGIHGDCSSTTTTDIELERGGREETQGLGDVGPVQQRSYPKPSAAE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01824 320 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Bva05g01824 320 PANTHER RING-H2 FINGER PROTEIN ATL64 18 224 - -
Bva05g01824 320 MobiDBLite consensus disorder prediction 193 252 - -
Bva05g01824 320 MobiDBLite consensus disorder prediction 235 252 - -
Bva05g01824 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 224 - -
Bva05g01824 320 MobiDBLite consensus disorder prediction 271 320 - -
Bva05g01824 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 163 IPR013083 -
Bva05g01824 320 SUPERFAMILY RING/U-box 95 163 - -
Bva05g01824 320 CDD RING-H2_EL5_like 114 157 - -
Bva05g01824 320 SMART ring_2 115 156 IPR001841 -
Bva05g01824 320 Pfam Ring finger domain 114 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01824 Bva-Chr5 14315337 14316725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01824 19 297 Rapid Response to Elicitors AT3G16720 50.676 1.38e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01824 - - cpap:110815123 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01824 05 14315337 14316725 Bva05g01824 05 14315337 14316725 ECH