Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01822 ATGGCTGAtcaggagaagaagaagaaggtcGCCATTATTAGTATCTCCTCCATCCTTCTCGTGGCCATGGTAGCCGCCGTGGCGGTGGGTCTAAACCATAGTGGCGAAGAAGAGATCGCGGGCGAAGGCGACGGCCAGATTACAGCATCTCAGAAGCATAAAGTAGACGCGGTTTGCCAGTCAACAGAATACAAGGAAACATGCGAGAAAACCCTTACCCAGGCAGGAAACAACACCAATGACATGAAAGGGCTGTTCAGAGCAGCGTTCAACGCCACCGCCATTGAAATCCAGAAGCACCTACACAACTCCACCCTCTTCCACGAGCTTGGCCAGGACAGCAGAACCAAACAAGCCCTTGAAGTCTGCCAGGAAGTGATGGGTTACGCCATTAACAACCTGAACGAGTCCATTGAAAAGCTGGACAAGTTTGATTTCAACAAGCTACAAGATTACGCCTATGATCTCAAGATTTGGCTGAGCGCAACCATGACCCACCAGCAGACTTGCCTGGACGCATTCGAAAACACGACCACCGGTGCAGGGAAGAAGATGACCAAGGTGTTGAACAGCTCCATGGAGCTGAGCAGCAATGCGCTGGACATGGTTGTTGGGTTCTCCAATCTGCTAAAGTCCCTGGATTTTGGGTCCAGCAGCCACAGGAAATTGATGTCGGTGGAGGAGGAAACACAGACAGTGGGTGGTTTCCCTTCTTGGGTCAGTGAGGGGCAACGAAGGCTGCTTGAGGGAACagaaaagattgatgtaacagtGGCCCAAGATGGAAGCGGAGACTTCACAACGCTCAACGATGCCCTTAGGACTGTGCCCAAGATGAGCAGTGCCCCATATGTGATACACGTGAAGGCGGGTATATACCAGGAGTACGTGGACATTCCCGGTGAAATGACCCACCTGACCATCATCGGAGATGGCCCCACCAAGACCAGGTTCACCGGCAAAAAGAACTCCCTGGACGGTCTCACCACTTACTTGACCTCAACATTTGGGGTTAACGGTAATTTCTTCACCGCCAAAGATGTTGGGTTCGAGAACAGCGCGGGAGCAGAGAAATTCCAAGCGGTGGCACTCCGTGTAACCGCCGACAAGGCAGTGTTTTACAACTGCCACATGGACGGTTACCAAGACACACTCTACACCCAATCCCAGAGGCAATTCTACCGCGACTGCCAAATCACCGGAACCATCGACTTCATCTTCGGCGACGCGGCGGGGGTCTTTCAGAACTGCAAGCTCATCGTGAGGAAACCACTGGACAACCAAGACTGCATCGTGGCTGCCGGCGGTAGGATGAAGCCGGAGGACCCAAATGGCCTTGTGTTCCAGAGCTGCCAGTTCACCGCCGACCCAGAATATTTGTCCTCTCGGGCTACCAATAGCAGGTGCTCGTTTTTGGCGAGACCATGGAGGCCATATGCAAAAACTGTGATCATGGATTCAAAGATTGATGCATTTTTTGATCCAAAAGGCTATCTTGATTGGGAGGGCGAATCTTTTCAACAGACCGCCACCGCTTATGAGTTTAACAACAAGGGAACCGGTGCTGACACCGCCGGGAGGGTGACGTGGCCCGGTGTCAAGGTCCTCTCCTCATCAGAAGCAAAAACTTACTATCCCAACAGCTTCTATGAGATTAAGGATGCATCAGAGAAAGATTCATTCATCGCCGCTGCCGGGATACCCTACGATGCcgggaaaatgaaaaaaggatCTAAAAAGAAGGCCGCCGTTTCAAGtta 1760 0.5034 MADQEKKKKVAIISISSILLVAMVAAVAVGLNHSGEEEIAGEGDGQITASQKHKVDAVCQSTEYKETCEKTLTQAGNNTNDMKGLFRAAFNATAIEIQKHLHNSTLFHELGQDSRTKQALEVCQEVMGYAINNLNESIEKLDKFDFNKLQDYAYDLKIWLSATMTHQQTCLDAFENTTTGAGKKMTKVLNSSMELSSNALDMVVGFSNLLKSLDFGSSSHRKLMSVEEETQTVGGFPSWVSEGQRRLLEGTEKIDVTVAQDGSGDFTTLNDALRTVPKMSSAPYVIHVKAGIYQEYVDIPGEMTHLTIIGDGPTKTRFTGKKNSLDGLTTYLTSTFGVNGNFFTAKDVGFENSAGAEKFQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCQITGTIDFIFGDAAGVFQNCKLIVRKPLDNQDCIVAAGGRMKPEDPNGLVFQSCQFTADPEYLSSRATNSRCSFLARPWRPYAKTVIMDSKIDAFFDPKGYLDWEGESFQQTATAYEFNNKGTGADTAGRVTWPGVKVLSSSEAKTYYPNSFYEIKDASEKDSFIAAAGIPYDAGKMKKGSKKKAAVSS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01822 586 PANTHER PECTINESTERASE 4 576 - -
Bva05g01822 586 CDD PMEI-like_3 57 203 - -
Bva05g01822 586 Gene3D - 253 574 IPR012334 -
Bva05g01822 586 SUPERFAMILY Pectin lyase-like 253 550 IPR011050 -
Bva05g01822 586 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Bva05g01822 586 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Bva05g01822 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 206 IPR035513 -
Bva05g01822 586 PANTHER PECTINESTERASE 4 576 - -
Bva05g01822 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 203 IPR035513 -
Bva05g01822 586 Pfam Pectinesterase 255 549 IPR000070 GO:0030599|GO:0042545
Bva05g01822 586 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Bva05g01822 586 SMART PMEI_2 50 202 IPR006501 GO:0004857
Bva05g01822 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01822 Bva-Chr5 14304614 14306714 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01822 3 574 Carbohydrate Esterase AT3G05610 43.448 1.35e-178 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01822 K01051 - gmx:100800194 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01822 05 14304614 14306714 Bva05g01822 05 14304614 14306714 ECH