Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01808 ATGTGTGGGGGTGCTATCATTTCCGACTACGTCTCCGGCGACAAGGATTGCCGCCGGTTGACTACCCGCGATCTCTGGTCCCAGATTGATCCCTTCTCGAATAATTTCGGCTTCGACGCCGAGCGCCAATCTCAATTTGCATTCAACGAAGgaGTGGCATGTGTCGACAGCAccaagaaggagaagaaaaacgCCGCTGCAAGAAAGGCAGTGAAGGGGACTCAGGCCCGGAGGGTCCGCAAGAACGTGTACAGAGGAATCAGACAAAGGCCATGGGGCAGGTGGGCTGCTGAAATAAGGGACCCACAAAAGGGTACCAGAGTCTGGCTTGGTACCTTCGATACCGACGTTGAAGCTGCCAGTGCTTACGACGAAGCAGCCAAGCGCATCCGCGGTGACAAGGCCAAGCTAAACTTCCCCACGGAGCCTGTGCCACAGGCTCCTGCTCCGGCTCTAGAGCCATCTGCCAAGAAGCTGTGCCTGAGCCCTGAGCTGGACCTGGAGACTATCTCAAGCCTGGAATCGTTCCTTGGTCTGGACCATGAGGAGCCGACCCAGCAGCCGGGTGGAAATGGCGGCTTGTGGGGCTCCACCGGAACCGAGCTCTGGAACCTGGATGACGTGGTTAACCATCACATGGTTTACTA 647 0.5533 MCGGAIISDYVSGDKDCRRLTTRDLWSQIDPFSNNFGFDAERQSQFAFNEGVACVDSTKKEKKNAAARKAVKGTQARRVRKNVYRGIRQRPWGRWAAEIRDPQKGTRVWLGTFDTDVEAASAYDEAAKRIRGDKAKLNFPTEPVPQAPAPALEPSAKKLCLSPELDLETISSLESFLGLDHEEPTQQPGGNGGLWGSTGTELWNLDDVVNHHMVY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01808 215 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 PANTHER EREBP TRANSCRIPTION FACTOR 1 160 - -
Bva05g01808 215 PANTHER DNA-BINDING DOMAIN 1 160 IPR044808 GO:0003700|GO:0009873
Bva05g01808 215 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Bva05g01808 215 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 CDD AP2 84 140 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Bva05g01808 215 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01808 Bva-Chr5 14261143 14261958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01808 1 212 AP2-EREBP Transcription Factor Family AT3G16770 40.076 2.21e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva05g01808 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01808 K09286 - rcu:8278775 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01808 05 14261143 14261958 Bva05g01808 05 14261143 14261958 ECH