Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01805 ATGGTTAGTTCACAAGCTGGTGGTGGAGAAGCAGAAAATGGTGAGAGATTCAAAGGGATGACTGTGGAAGATGAAAAACCAGTTGGTGGAGGACAAGGAGTAAGAGATCAGGATGAAGAAGCTTTGGTTTCAGATAATAATAACGCAGTGGAGCTTCGTTTTCTTGGCGAGGAATTCCAGAAGAACCCAATACAGGCGAATAagatcaaaaggaaaagaccTAGAACAATCAAGACAAGCGAGGAAGTTCAGAGTCAGCGTATGATTCACATGGCAGTTGAAAGGAACAGGAGGAAGCAAATGAACGAGCATCTTCGCGTCTTGAGATCACTCATGCCGGGTTCATACGTTCAGAGGGGTGATCAAGCTTCAATAATTGGAGGAGCCATAGAATTTGTGAGAGAATTGGAACAACTTCTTCAGTGCTTGGAGTCACAGAAGAGTAGAAGACTACTTGGAGAAGCAGGTCATTCAAGAGCGCAGCTGGGGGATAATTCTTCACTTCAAATACAGCAGCCTCCATTCTTCCCATCTACGCCTTTACCAAATGAGCACATGCTTGAGACTGGACTTCACGAAGACACCGCAGAGAATAAGTCGTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATTCTATCCAGAAGAAGGCCAGGGCAGTTAATCAAGACCATTGCTGGCCTTGAGGATCTCCAGCTTATTATCCTTCACACCAATATCACCACCATTGAACAAACAGTCCTCTATTCATTCAACGTCAAGGTAGCAAGTGATTCAAGTTTCACAGCAGAAGATATAGCAAACTCTGTTCAGCAGATATTTAGTTTTATCCATGCAAATACTGGCATGTG 869 0.4269 MVSSQAGGGEAENGERFKGMTVEDEKPVGGGQGVRDQDEEALVSDNNNAVELRFLGEEFQKNPIQANKIKRKRPRTIKTSEEVQSQRMIHMAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKSRRLLGEAGHSRAQLGDNSSLQIQQPPFFPSTPLPNEHMLETGLHEDTAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAGLEDLQLIILHTNITTIEQTVLYSFNVKVASDSSFTAEDIANSVQQIFSFIHANTGM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01805 289 MobiDBLite consensus disorder prediction 1 40 - -
Bva05g01805 289 SMART finulus 91 142 IPR011598 GO:0046983
Bva05g01805 289 PANTHER TRANSCRIPTION FACTOR FAMA 21 288 - -
Bva05g01805 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 136 IPR011598 GO:0046983
Bva05g01805 289 MobiDBLite consensus disorder prediction 16 40 - -
Bva05g01805 289 CDD bHLH_AtFAMA_like 88 156 - -
Bva05g01805 289 PANTHER TRANSCRIPTION FACTOR FAMA 21 288 IPR044283 GO:0003700|GO:0010052
Bva05g01805 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 151 IPR036638 GO:0046983
Bva05g01805 289 Gene3D - 76 151 IPR036638 GO:0046983
Bva05g01805 289 Pfam Helix-loop-helix DNA-binding domain 86 137 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01805 Bva-Chr5 14256682 14258958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01805 49 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 70.751 6.10e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g01805 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01805 - - pvu:PHAVU_003G033900g 390.193