Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01795 ATGTCAGGCGTATCTCTCAAGTGTGGGGATTGTGGAGCGCTATTGAAATCTGTACAAGAAGTTCAGGAGCACGCCGAGCTCACCTCCCACTCTAACTTCTCTGAATCTACCGAAGCAGTTCTTAACCTTGTTTGCACCACTTGTGGCAAGCCATGCCGATCAAAAACCgAGAGTGATTTGCATACAAAAAGAACTGGACATACTGAGTTCGTTGATAAGACTTCTGAGGCAGCTAAACCAATAAGTTTAGAGGTTCCAAAGGGAGAAGCAACATCAAAAGAGGCCGAGGATGCAACTACTGACCAGAATGAAGAAATGGTTGTTCCGGAAGTTGACAAAAATCTGCTTGGGGAACTTGAGTCCATGGGTTTTCCTGCAGCTCGAGCAACACGTGCACTTCATTATTCTGGTAATGCTAGTGTTGAAGCTGCCATAAATTGGGTAGTTGAACATGAGAATGACCCTGACATAGATGAGATGCCAttgGTACCTGCCAACACTAAAGTTGAGGCCCCTAAACCTTCTCTTACACCAGAACAAATGAAGGCCAAACAACAGGAGCTAAGgGAGAAGGCTcgcaaaaagaaagaagaggaagagaagaggacggagagagaaagagaaaagGAGAGAATTCGTGTGGGCAAGGAGTTGTTAGAAGCAAAGAGGattgaagaagagaatgagagaaaaagGTTGCTGGCTTTGCGAAAAgcagagaaagaggaagagcAAAAGGccagagagaaaattaagcaGAAACTGGAAGAAGATAAGGctgaaagaaggagaagactTGGATTGCCTCCAGAAGAACCTTCAACTGCCAAACCTTCGACTGTTGTGGAGGAGAAAAAGAGTTATTTGCCTGTTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAATGCTTGCGTTCTCTCAAGCAGAATCACAAGGACGATGATACTAGAGTCAAAAGAGCATTTCAGACTCTTCTTACTTACGTGGGGAATGTCGCCAGAGCTCCTGATGaggaaaaattcagaaaaattAGACTTGCTAACCAAACTTTCCAAGACAGAGTTGGTTCATTGAACGGGGGCATTCAGTTCCTGGAGATCTGCGGGTTTGAGAAAATTGATGGTGGcgagtttttgtttttgcctAGGGACAAGGTTGACATGCAAGTCCTGAATTCAGCTGGATCTGAACTGGACTCTGCAATAAAAAATCCCTTTTTTGGAGTTCTTTA 1232 0.3864 MSGVSLKCGDCGALLKSVQEVQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEVPKGEATSKEAEDATTDQNEEMVVPEVDKNLLGELESMGFPAARATRALHYSGNASVEAAINWVVEHENDPDIDEMPLVPANTKVEAPKPSLTPEQMKAKQQELREKARKKKEEEEKRTEREREKERIRVGKELLEAKRIEEENERKRLLALRKAEKEEEQKAREKIKQKLEEDKAERRRRLGLPPEEPSTAKPSTVVEEKKSYLPVRPATKAEQMRECLRSLKQNHKDDDTRVKRAFQTLLTYVGNVARAPDEEKFRKIRLANQTFQDRVGSLNGGIQFLEICGFEKIDGGEFLFLPRDKVDMQVLNSAGSELDSAIKNPFFGVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01795 410 Coils Coil 181 213 - -
Bva05g01795 410 MobiDBLite consensus disorder prediction 183 210 - -
Bva05g01795 410 CDD PUB_UBA_plant 304 410 - -
Bva05g01795 410 SUPERFAMILY UBA-like 95 164 IPR009060 GO:0005515
Bva05g01795 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Bva05g01795 410 SUPERFAMILY PUG domain-like 291 406 IPR036339 -
Bva05g01795 410 SMART PGNneu 320 383 - -
Bva05g01795 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Bva05g01795 410 MobiDBLite consensus disorder prediction 239 270 - -
Bva05g01795 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Bva05g01795 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Bva05g01795 410 Coils Coil 216 261 - -
Bva05g01795 410 MobiDBLite consensus disorder prediction 168 210 - -
Bva05g01795 410 Pfam UBA/TS-N domain 117 147 IPR015940 -
Bva05g01795 410 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Bva05g01795 410 MobiDBLite consensus disorder prediction 239 289 - -
Bva05g01795 410 CDD UBA_PUB_plant 110 158 - -
Bva05g01795 410 Gene3D - 298 400 - -
Bva05g01795 410 Gene3D - 112 158 - -
Bva05g01795 410 Pfam PUB domain 317 389 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01795 Bva-Chr5 14206905 14213818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01795 104 410 C2H2 Transcription Factor Family AT1G04850 79.355 4.01e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01795 K24348 - gmx:100794687 624.009