Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01777 ATGACTACTCAATTTTCCTTCCTACCTTTTATTGTTTATGCTAGGAACagaaattcttcaaatattttcagTGAGATGGGggtaaaggaaaagaaagctgcgaagaagaatttgaaaaatgctACTGCTAAGCTATCTGTTTCGAACAACAAAACAGAGGCTGCTGATTTTCTGCCCTTGGAAGGTGGCCCTGCTCGAAAACTTCCTAAACAAAATCCACCTGAAAATACTGCAACAGTTTTATATGTTGGACGAATACCACATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGACAATTTGGTACTATCAAGAGAATGAGGATTGCTAGAAACAAAAGGACaggaaaatcaaaacattttgGATTCATAGAATTTGAATCTCCCGAGGTGGCTAAAATTGTAGCTGACACTATGCATAATTACCTGCTATTTGAACACCTTCTCCAGGTTTATCTGATACCTCCAGAGCGTGTTCATCCAAAATTATGGAAAGGTTTCAATTACCGTTTCAAACCAGTAGACACGTTGCAAATTGAAAGAACGCGACATAACAAGGAGAGAACATTAGAAGAACACAAGAAGTTTGTGGAGAAGATCCTAAAGCGCGATCAAAAACGACGGAAGAGGATAGAGGCTGCTGGCATTGATTACGAATGCCCCGAGATTGTCGGTAGCGTCCAGCCTGCACCAAAGAAGATAAAGTTTGAAGACTA 719 0.3616 MTTQFSFLPFIVYARNRNSSNIFSEMGVKEKKAAKKNLKNATAKLSVSNNKTEAADFLPLEGGPARKLPKQNPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRMRIARNKRTGKSKHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYLIPPERVHPKLWKGFNYRFKPVDTLQIERTRHNKERTLEEHKKFVEKILKRDQKRRKRIEAAGIDYECPEIVGSVQPAPKKIKFED 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01777 239 CDD RRM_NIFK_like 80 152 - -
Bva05g01777 239 SMART rrm1_1 80 153 IPR000504 GO:0003723
Bva05g01777 239 Coils Coil 31 51 - -
Bva05g01777 239 PANTHER - 26 238 - -
Bva05g01777 239 Gene3D - 28 154 IPR012677 -
Bva05g01777 239 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 26 238 - -
Bva05g01777 239 SUPERFAMILY RNA-binding domain, RBD 62 166 IPR035979 GO:0003676
Bva05g01777 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Bva05g01777 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01777 Bva-Chr5 14100301 14104539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01777 79 152 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 1.54e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01777 K14838 - gmx:100778780 351.288