Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01772 ATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCTGGTTCTTCAGCCAGCAATGCAGGAACTAGTAACACTTCAGCTTCTGCACGGGTATATGTTCCTCCACATCTCAGGAACCGTCCACCCTCTGCTGAGTCCCCTGCTCCAGCTCATAGTGGCCCTGCGTCTGGTACTGGGCCTGGGCCTGGGCCTACTGCTAATGCTGGATCACGTTGGGCTGCGCCTAGAAATGACTGTCGTCCAGGgtatggtggtggtggtggtggtggtgctggTGGCAGTGGCCGCACGAGTGGTTGGGGAAACAGAAGCGGTGGTTGGGATAATCGAAGCAGGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATGATGCAGAGCAAGCATTCAGTGAGAAGGAGAATACAGGGATAAATTTTGATGCATATGAAGATATTCCAGTGGAGACCAGTGGTGATAATGTGCCTCCTCCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCTGAATATAAGAAGGTGCAAATATGTGAAGCCAACCCCTGTTCAGCGGCATACTATCCCAATATCTCTTGCTGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCTTTTTGTTTCCCAATCATTAGTGGAATTATGAGGGGCCAACCTGCTCAAAGGCCTCGTGGCTACCGTGCAGTATACCCACTTGCACTTATTCTATCTCCAACTAGGGAGCTATCAATGCAGATACATGAAGAAGCCAGGAAGTTTTCATATCAAACACAGGTTAGAGTGGTAGTTGCTTATGGTGGAGCACCCATAAATCAGCAGctGCGGGATCTTGAGAGAGGGGTTGACATTCTTGTTGCAACTCCTGGGCGATTGGTAGATTTGCTGGAGAGGGCTAGAGTTTCATTGCAGATGATCagatatttagccttggatgAGGCAGATCGGATGCTGGATATGGGATTTGAGCCTCAAATAAGGAAGATTGTAGAACAGATGGATATGCCCCCACCAGGTGTCAGACAGACTATGCTGTTTAGTGCTACTTTTCCTAAAGAGATACAGAGATTGGCCTCTGACTtcctttcaaattatattttcctgGCTGTTGGAAGGGTGGGCTCAAGTACTGATTTAATTGCCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCACCTTATGGACCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCATTGACGTTAGTATTTGTTGAGACGAAAAAGGGAGCAGATTCACTGGAGCATTGGTTGTGTCTCAATGGCTTTCCAGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACTGGCATTAAGGTCATTTAAAAGTGGAAACACTCCTATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCTCATGTTGTCAACTTTGATCTGCCAAATGATATTGACGATTATGTACACCGAATTGGAAGGACAGGACGAGCTGGAAAGACTGGCCTGGCGACTGCATTCTTTAATGACAACAATGCGTCTTTAGCAAGGGCTTTATCAGAGCTGATGCAAGAAGCAAATCAAGAAGTACCTATTTGGCTCTCACGGTACGCTGCTCGATCTTCCTATGGAGGAAGGAACCGCAGATCAGGAGGAGGCCGGTTTGGTAGCCGTGATTTTAGAAGGGAAGGCTCTTTCAATAGAGGGGGTGGTTCTGATTACTACAGCGCAGGCAACAGCAGTGGTGGATACGGGGCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGGGTCACTAGTGCTTGGGACTG 1871 0.4613 MRTSWADLAANSAAENAGPGSSASNAGTSNTSASARVYVPPHLRNRPPSAESPAPAHSGPASGTGPGPGPTANAGSRWAAPRNDCRPGYGGGGGGGAGGSGRTSGWGNRSGGWDNRSREREVNPFGDEDDAEQAFSEKENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPAQRPRGYRAVYPLALILSPTRELSMQIHEEARKFSYQTQVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIAQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNASLARALSELMQEANQEVPIWLSRYAARSSYGGRNRRSGGGRFGSRDFRREGSFNRGGGSDYYSAGNSSGGYGASGGYAGGYGPGVTSAWD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01772 623 MobiDBLite consensus disorder prediction 113 127 - -
Bva05g01772 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 537 IPR027417 -
Bva05g01772 623 SMART helicmild6 438 519 IPR001650 -
Bva05g01772 623 MobiDBLite consensus disorder prediction 1 129 - -
Bva05g01772 623 MobiDBLite consensus disorder prediction 562 584 - -
Bva05g01772 623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 558 IPR001650 -
Bva05g01772 623 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Bva05g01772 623 SMART ultradead3 184 395 IPR014001 -
Bva05g01772 623 CDD SF2_C_DEAD 392 528 - -
Bva05g01772 623 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 591 - -
Bva05g01772 623 MobiDBLite consensus disorder prediction 1 36 - -
Bva05g01772 623 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 55 591 - -
Bva05g01772 623 Pfam Helicase conserved C-terminal domain 404 519 IPR001650 -
Bva05g01772 623 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 380 IPR014001 -
Bva05g01772 623 Pfam DEAD/DEAH box helicase 189 369 IPR011545 GO:0003676|GO:0005524
Bva05g01772 623 Gene3D - 383 563 IPR027417 -
Bva05g01772 623 CDD DEADc_DDX3_DDX4 166 386 IPR044763 GO:0003724|GO:0005524
Bva05g01772 623 Gene3D - 121 382 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01772 Bva-Chr5 14082064 14088319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01772 163 552 Eukaryotic Initiation Factors Gene Family AT3G19760 31.458 5.12e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01772 K11594 - gmx:100795756 957.592