Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01758 ATGAGGGGAAGAAGTTATACTCCATCACCACCACGGGGCTATGGCAGAAGAGGAAGGAGCCCAAGCCCAAGGGGCCGTTACGGTGGCGGTGGCCGTGGCCGAGATCTCCCTACTAGCCTTCTAGTTCGCAACCTTCGCCATGATGTCAGGCCTGAGGATCTTCGCAGACCATTTGGGCAGTTTGGTCCTCTTAAGGACATTTACCTGCCAAAGGATTATTACACTAGAGAGCCCcgtggttttggttttgtccAGTATGTGGATCCGGCCGATGCTGCAGAGGCCAAGTATCATATGGATGGTCAAATTCTTCTCGGTCGAGAGTTGACTGTTGTGTTTGCCGAGGAGAATAGGAAGAAACCAGTTGAGATgagacaaagagaaagaagGGGCGGTCGGCTTTATGATAGAAGGAGGTCTCCTCCCCGATCACCTCGGTCACCACCACCTCATAGATCTCAGTCTCGAAGTCGCGATTACTATTCCCCTCCTCCCAAGCGAAGGGAATACTCAAGATCCCCCTCACCCGAAGATAGAAGGTACAGTCGAGAAAGATCATTTTCACGACACAGCAGGGAGAGGTCGTTCTCGCGCTCCCCACCGCCCAACAATGGTGGATCAAGGAGCCGTAGTCAGAGCCCAACTAAGGTGGTTCCGAACCGGAGCAGAAGCCAGAGTCCAAGGGAACCTGCCCGTGCAAGgtaTTTACCTTGGTGGGTCTTATTTGTAGAGGTGCTGCAGCAAAGCAATATTGGGTTTCTTCTATTTGGCTGGTTAGATCAGGCTTTGCCCACCAGTGACATTGGGCTGAGCTG 815 0.5043 MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGGRGRDLPTSLLVRNLRHDVRPEDLRRPFGQFGPLKDIYLPKDYYTREPRGFGFVQYVDPADAAEAKYHMDGQILLGRELTVVFAEENRKKPVEMRQRERRGGRLYDRRRSPPRSPRSPPPHRSQSRSRDYYSPPPKRREYSRSPSPEDRRYSRERSFSRHSRERSFSRSPPPNNGGSRSRSQSPTKVVPNRSRSQSPREPARARYLPWWVLFVEVLQQSNIGFLLFGWLDQALPTSDIGLS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01758 271 SMART rrm1_1 39 112 IPR000504 GO:0003723
Bva05g01758 271 MobiDBLite consensus disorder prediction 161 196 - -
Bva05g01758 271 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Bva05g01758 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Bva05g01758 271 Gene3D - 34 145 IPR012677 -
Bva05g01758 271 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 229 - -
Bva05g01758 271 MobiDBLite consensus disorder prediction 1 37 - -
Bva05g01758 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Bva05g01758 271 MobiDBLite consensus disorder prediction 197 226 - -
Bva05g01758 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 229 - -
Bva05g01758 271 MobiDBLite consensus disorder prediction 120 143 - -
Bva05g01758 271 MobiDBLite consensus disorder prediction 120 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01758 Bva-Chr5 14023454 14028370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01758 38 163 Eukaryotic Initiation Factors Gene Family AT4G34110 26.772 7.07e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01758 K12900 - gmx:100775883 257.684