Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01748 ATGATCCGAAAATCAAACGAATCGGATCGCCGGGTCTTCACGTTTCCGGCAGTTCAGCCCAGTGAAAATATCTCTCTCCTCACCCTCCTCACTTCTCTGATTGCCCTTTCTCAGAAAATTTCCAATCATAGATCCCAATTCTTCGCTAGCAATAAGCGAAATGCGAGAAAAGCCATAACTATAATCGAGGGTCTTCAAGTTTTCCTCGAAGAGATCCGAGACCAGGAATGGAGTCTACCCAATTCGGTGATCCTGAGCTTTTCTGAGCTCCATTTGACTTACCAGAAGCTCCAGTTCTTGTTGGAAGACTGTACCCTCGAAGGTGCACAGCTATGGATGTTGATGGAGTCGGATCGGGTCGCAACCAAGTGCCGGGTCTTGTCTAGATCAATAGCCACAGCACTGGATGTCTTCCCATTGAGCTCCGTTCCAATTTCAGTGGAAGTTAACGAGCAAGTGGAGTTGCTAATGAAGCAAGCAAGAAAAGCAAGGTTTGAACTTGAACCAGATGATGAACAGGTCATGATGGTTGTGTTTTCGGTTTTGAATCAATTCCAGAATAGGATTACTCCAACTGAGAGTGATCTAAAATGGATTCTTGCTCATATTGGGCTTAGAAGATGGAGTGAGTGTAACAAAGTGCTTAAGTTTCTGGATTCAGAAATTGGGTTTGAGTGCTTGAatgaggaaaagagaaagatgacATTTTTAGGTAGTTTGATAGGGTTCATGAGCTATTACAGATGCGTGGTGTACAACGTTGTTGATGATGAAGACTATGACCCAAAATCGAATCGCAGAGAAAGCTGCAGCAACATCATTGACAGTGAGATCCTAGGTTGTCTGAACCCAGATGATTTTCGATGTCCAATCTCTCTGGAGTTCATGACTGATCCAGTTACAATAGAGACTGGTCATAGCTATGATCGCTCTTCAATTCTCAAATGGTTTAGGAGTGGGAGTCCAACTTGTCCCAAGACAGGAAAAAGCCTTACAAGCCTTGAATTGGTCCCCAATTTAGTTCTACGTAGATTGATTCATCAATATTGCTCTGAAAATGGTGTTCTTATTGCTGATCCGGCTCGTGACGCTCGTCGGAACTGGGACATCTCGAGGACAGCTCAACCTAGAAGCTTGGCACCAGAGGAAGCTATGAAAATGGTGGCGAATTTCCTTAGTTACAGGCTTGAAACTGGAACCATGGAAGAGAGGAATAAAGTTGCTTATGAGATTAGGCTTCTTACTAAAACAAGCATTTTTAATAGGTCTTGTTTGGTAGAAGCAAAAGCAATTCCTCATTTTTTGCAGCTATTTTTATCTAAGGACTCATCAACTCAAGAGAATGCCATTACAGCACTTCTGAACCTCTCAAAACACCCCAAGGGAAGAGCCATAATAGTTGAGAATTGGGGGTTGGAATTGATTGTGGGTGTCCTAAACAAGGGTCTAAAGATCGAAGCTCGCCAGCATGCTGCTGCTACATTGTTCTACCTTGCTTCGAACGAGGAGTTCCGGAGACTAATAGGGGAGCAACCAGAGGCAATTCCATCATTGATCAAACTCATCAAAGATGGGTCAGATAGAGCCAAAAAGAATGGCTTGGTTGCAATCTTTGGCCTCAGTATGCAACCGGAAAATCACATGAGATTACTTGCAGCAGGGGCAATCCCTATGCTGGTAAAGATGTTAAAATCCTGTGATAGACAAGACCTTGTCACTGATTCACTTGCAGTTCTAGCTACTTTAGCCGCGAGGATTGATGGAACAATCGAAGTGCTTCGATGCGGAGCTTTACCTCTAGTAGTTGGAGTAATGAGTTCCCTAACTTCAAGGATGGGAAAGGAGTACTGCGTGTCCTTGTTGCTTTCTCTATCAATCAATGGAGGAGCAGATGTGGTTGCTATCTTAGGGAAGAGTTCTTCTCTGATGCGATCCTTGTATTGGATACTTGGCGAAGGCACAGCTCAAGCAAGCAAGAAAGCCAGTGCTCTCATCAGGGTCCTCCAAGATTTTTCTGAAGGGAGGTCCTCTGGCTTCAAGCCTTCAGTTCTTCCTCAAGAACAAGTTGCTCACGTATGGTA 2081 0.4363 MIRKSNESDRRVFTFPAVQPSENISLLTLLTSLIALSQKISNHRSQFFASNKRNARKAITIIEGLQVFLEEIRDQEWSLPNSVILSFSELHLTYQKLQFLLEDCTLEGAQLWMLMESDRVATKCRVLSRSIATALDVFPLSSVPISVEVNEQVELLMKQARKARFELEPDDEQVMMVVFSVLNQFQNRITPTESDLKWILAHIGLRRWSECNKVLKFLDSEIGFECLNEEKRKMTFLGSLIGFMSYYRCVVYNVVDDEDYDPKSNRRESCSNIIDSEILGCLNPDDFRCPISLEFMTDPVTIETGHSYDRSSILKWFRSGSPTCPKTGKSLTSLELVPNLVLRRLIHQYCSENGVLIADPARDARRNWDISRTAQPRSLAPEEAMKMVANFLSYRLETGTMEERNKVAYEIRLLTKTSIFNRSCLVEAKAIPHFLQLFLSKDSSTQENAITALLNLSKHPKGRAIIVENWGLELIVGVLNKGLKIEARQHAAATLFYLASNEEFRRLIGEQPEAIPSLIKLIKDGSDRAKKNGLVAIFGLSMQPENHMRLLAAGAIPMLVKMLKSCDRQDLVTDSLAVLATLAARIDGTIEVLRCGALPLVVGVMSSLTSRMGKEYCVSLLLSLSINGGADVVAILGKSSSLMRSLYWILGEGTAQASKKASALIRVLQDFSEGRSSGFKPSVLPQEQVAHVW 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01748 693 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Bva05g01748 693 Pfam U-box domain 284 353 IPR003613 GO:0004842|GO:0016567
Bva05g01748 693 Gene3D - 513 668 IPR011989 -
Bva05g01748 693 SUPERFAMILY ARM repeat 390 668 IPR016024 -
Bva05g01748 693 CDD RING-Ubox_PUB 287 329 IPR045210 -
Bva05g01748 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Bva05g01748 693 Pfam Armadillo/beta-catenin-like repeat 421 457 IPR000225 GO:0005515
Bva05g01748 693 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Bva05g01748 693 SUPERFAMILY RING/U-box 284 359 - -
Bva05g01748 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Bva05g01748 693 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 681 - -
Bva05g01748 693 SMART arm_5 585 626 IPR000225 GO:0005515
Bva05g01748 693 SMART arm_5 543 584 IPR000225 GO:0005515
Bva05g01748 693 SMART arm_5 459 500 IPR000225 GO:0005515
Bva05g01748 693 SMART arm_5 417 458 IPR000225 GO:0005515
Bva05g01748 693 PANTHER U BOX DOMAIN-CONTAINING 4 681 - -
Bva05g01748 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 357 IPR013083 -
Bva05g01748 693 Gene3D - 382 512 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01748 Bva-Chr5 13973805 13976237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01748 1 693 U-box Gene Family AT1G10560 43.989 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01748 - - gmx:100795816 790.03