Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01738 ATGGGAGAAACCGGTATTGTCCGGTTCCCGGGAAGTTTAGACCCTGGAGCGGAAGAGTTCAGGCCAGGAAACCATCCGGCGGCCACCCTGTTCAGGCCAACCCAAGTGTACTACCCGTACTCATGTCCGTACGCGCCGAGTGGAAGCGGGGTACCGTTTTCGGATGGGTTGGCTGTTGGCGTACCGTATCCCCACTTCTCTACTCCGGCGGTGTACGTTAGCCCACCTGCTCCTACTGTGGTGGCGGCGCCGCCCGTGCCGCCTTCCTCGTCTCCTACTCGTTCGCTGCTGCTGAGCGCTGTGGCATCGGAGTTCGTAAGCGAGTCGATGGTGAGGAGAGAATTGGAGGTGTTTGGTGATGTAAGAGGGGTGCAGATGGAGAGGTTGCGTGATGGAATGGTGACCGTTCATTTCTATGACCTCAGACATGCAGAGATGGCGTTGACGGCGATTAGGAATCAGCACATGCAACAGCAGACCAGACTTTGCAACCACTACGCTTCCTTGGTCAAGTCACGCATTTCATTCTCAGAAGCTGAATTTTATGCCGCGGCCCCACTTCCACCGCCGGCGCGTGGTCTTATCGCCGGTCGTCCTGTGTGGGCCCAATACATTGTTCCCCCGTATAATGCCCTCCCTGATGGCCACAACCAAGGGACTATCGTCATTTTCAATTTGGACTCAGAAGTGTCTGCTCAGAGTCTAAGAGAAATTTTCGAGCCTTTTGGACCCATAAAGGAATTGAGAGAGACGCCATCAAAAAAGAACCAAAGGTTCGTGGAGTTCTTTGACATCAGAGATGCTGCCAAGGCTTTGAAAGAGATGAATGGGAAGGAAATTCATGGCAAGGCAGTTATTATTGAATTCAGTCGACCCGGTGGTCATAGCAGGAAATTCTTCAACGCTGCAATTTCCAAAAACAACAATGTTCATCACACCAAGTCTATGAATCTACCGCCGCCGCTGCAGCCGCCGTCAATGTCACCTCCTTCTCCTCCACCATTGCCGCGGAAATACCCACGCTCTCCTCGCCCCCATTTTCCTCAAAACCCATTATCCAGCAACAAATCAATGGTCAAAAAGGGACGCTTTAATGTGAATACTAGTGTGAATGAGGGTGCAAATTCATCTGGGTCCATTGAAACAACAATGGGTTCAATGAATTTGGGTGGTGCAGTTGGAAATGGAGTTGAAGACAAGTATTCAAATGGGCCTCAGAGcagaaatttcatcaaacaccATAGCAGCTCAAGGCCCCAACCAGCTAGAAATAGGAATTGGAAGGGGAAGCTGAAGCACGCAAAGAAGCTCGAAACAAGGTTTCTAATTAAAGAAGATGCTATTGTAGAGTCCAGTTCCAGAGATCCCAGAACTACTGTTATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTGCTGTTGAACATGTTGGATAACCACTGCATTCACTGCAACGAGCAGATTGCCGAGGGAGACGACCAGCCTCTGTCTTCCTACGACTTTGTCTACCTTCCCATTGATTTCAACAACAAATGCAATGTGGGATATGGGTTTGTGAATCTGACATCGCCGGAAGCAACGTTGAGGTTCTATAAAGCCTTCCATCTTCAGCATTGGGAGGTTTTCAATTCTAGAAAAATCTGCGAAGTCACCTACGCAAGGGTTCAGgggtTGGAAGCTTTGAAAGAGCACTTCAAGAACTCGAAGTTCCCATGCGAGATGGAGCACTACCTTCCGGTGGTGTTCTCACCACCGCGAGACGGGAGGCAACTGACGGAGCCGCTTCCGATCGTTGGTcagaaacaacaaaacaatgaGATGGACGGCGACGATGACGGTGATCAAAACGACATGCCTAGCAGCTGCAGCAGCCAAAACGGCGTCGTTGGCGACGACGACCAGGATAAGCATGGCCAGCGTTTTGATTCTCGACTCTACCAAGCATCGTTGAGTAACGAGCGCAACTGTACAGAAGATTA 1982 0.4929 MGETGIVRFPGSLDPGAEEFRPGNHPAATLFRPTQVYYPYSCPYAPSGSGVPFSDGLAVGVPYPHFSTPAVYVSPPAPTVVAAPPVPPSSSPTRSLLLSAVASEFVSESMVRRELEVFGDVRGVQMERLRDGMVTVHFYDLRHAEMALTAIRNQHMQQQTRLCNHYASLVKSRISFSEAEFYAAAPLPPPARGLIAGRPVWAQYIVPPYNALPDGHNQGTIVIFNLDSEVSAQSLREIFEPFGPIKELRETPSKKNQRFVEFFDIRDAAKALKEMNGKEIHGKAVIIEFSRPGGHSRKFFNAAISKNNNVHHTKSMNLPPPLQPPSMSPPSPPPLPRKYPRSPRPHFPQNPLSSNKSMVKKGRFNVNTSVNEGANSSGSIETTMGSMNLGGAVGNGVEDKYSNGPQSRNFIKHHSSSRPQPARNRNWKGKLKHAKKLETRFLIKEDAIVESSSRDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIAEGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNLTSPEATLRFYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRQLTEPLPIVGQKQQNNEMDGDDDGDQNDMPSSCSSQNGVVGDDDQDKHGQRFDSRLYQASLSNERNCTED 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01738 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 292 IPR000504 GO:0003723
Bva05g01738 660 MobiDBLite consensus disorder prediction 645 660 - -
Bva05g01738 660 MobiDBLite consensus disorder prediction 318 347 - -
Bva05g01738 660 MobiDBLite consensus disorder prediction 311 357 - -
Bva05g01738 660 PANTHER TERMINAL EAR1-LIKE 1 30 636 - -
Bva05g01738 660 SUPERFAMILY RNA-binding domain, RBD 75 160 IPR035979 GO:0003676
Bva05g01738 660 SMART rrm1_1 95 164 IPR000504 GO:0003723
Bva05g01738 660 SMART rrm1_1 220 288 IPR000504 GO:0003723
Bva05g01738 660 CDD RRM3_EAR1_like 457 558 IPR034458 -
Bva05g01738 660 SUPERFAMILY RNA-binding domain, RBD 220 536 IPR035979 GO:0003676
Bva05g01738 660 Gene3D - 214 299 IPR012677 -
Bva05g01738 660 MobiDBLite consensus disorder prediction 404 425 - -
Bva05g01738 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 284 IPR000504 GO:0003723
Bva05g01738 660 PANTHER RNA BINDING PROTEIN 30 636 - -
Bva05g01738 660 Pfam RNA recognition motif 2 457 567 IPR007201 -
Bva05g01738 660 MobiDBLite consensus disorder prediction 590 660 - -
Bva05g01738 660 MobiDBLite consensus disorder prediction 404 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01738 Bva-Chr5 13892468 13895399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01738 217 359 Eukaryotic Initiation Factors Gene Family AT1G49760 29.139 6.91e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01738 - - zju:107428470 691.419