Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01725 ATGGGTCTCTCGAATTTCCCGAGTGCCGCCGAGGGAGTGCTGCCGGTGCTGGTAATCAACACTGTTCTGTCGATGGCTCTGTTGAAGAACATGTTCAGATCGGTTCTGCAGGTGGTTGGTGGCAGTGAGAGTGGTGGTGCGGCCACTTCGGAATCAGACTCCGAAGAAAGCAGTGGTTTTTCGAGGGAAAGGAGGATCTCGATAACCCAATACAAATCCTTGTTCGACAATAGCTCCGCCATGGCCGACACGACCAACAGTTCGACGGTGGAGTGCTGTGTTTGTCTCTCTCGGTTTGAAGCTAATCAGGAGGTGAGCCAGTTATCTTGCAACCATTTCTTCCACAGAGGTTGCTTGGACAAATGGTTCCATAACAAGCATAGCACTTGTCCTTTGTGTCGCTCCATAGATTA 413 0.5061 MGLSNFPSAAEGVLPVLVINTVLSMALLKNMFRSVLQVVGGSESGGAATSESDSEESSGFSRERRISITQYKSLFDNSSAMADTTNSSTVECCVCLSRFEANQEVSQLSCNHFFHRGCLDKWFHNKHSTCPLCRSID 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01725 137 SMART ring_2 92 133 IPR001841 -
Bva05g01725 137 MobiDBLite consensus disorder prediction 42 63 - -
Bva05g01725 137 SUPERFAMILY RING/U-box 91 135 - -
Bva05g01725 137 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Bva05g01725 137 Pfam Ring finger domain 91 134 IPR001841 -
Bva05g01725 137 PANTHER F21J9.24-RELATED 1 136 - -
Bva05g01725 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 137 IPR013083 -
Bva05g01725 137 PANTHER - 1 136 IPR044249 -
Bva05g01725 137 CDD RING-H2_PA-TM-RING 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01725 Bva-Chr5 13826080 13826493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01725 1 135 C3H Transcription Factor Family AT2G04240 34.932 4.48e-22 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01725 K16285 - gmx:100811790 175.637