Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01719 ATGAAGAAAACCTATCGTTCTACCCTTTTCCGGGGAAACCCCGATTTCAATCGGAGAACTTACGCTCCACGCAATTACCGGGGCCCCGTCtataattcttattatcaTCGCCAAACAGAGCATTTCGACCGGCCGCTGGAGCATAATGCCCCTCTCCGGTGCGTCAATTTCGTCGTCGAGCTTCACTCTGGTTCCCGTGGCTTTAGCAGGGAACATGTGGAGTCCTTAATCGCAAAATGCACGCCCAAGGCGGaaaacttttgttttcacCCAAGTGATCATGTTGCCGCTGCCCTGCATTTTAGCCAGTGGGTCGACACACTCAACGCCATTGCCTGCTTATGGGAATTTCGCCTCAATGAAGTTCACAATTTTACCCCGGAGCTCACGTCGTATGTTCTCGTACCTTCCGACATGGACGAGCTACAGGGCTGCCTCCGGTCCCTTTTTGCCGATCATGTTAAGAGCCTCATGGAAGGCAAGGAAGTAAAGATGTGGCTCGAGAAAATTAAGCCAATCTCGAAAGAAATCAAGAAACTTTCGGGTTTGCTTACGAAGCCCAAAAATATTCCACTGATGAACGAACTCCGACAAAAGAAGCAGGGACTTGATGCTGAGAAGCTGCTGATTGAAAGAAGAGTAAACGAGTTTCAGACTGCAATGAAGCGTATATTGCACTATGTCGAGGAGAATAACCGGGAGGAAACTGATGAGGATGTCTTTCCAATATTAAAGCTTGATGGAAGCCTGAATTGGAAGCGGGTTCATAGTCTGATAAAAAGGGAGCGGCGCCGACTTGAGGACGGATTACCCATTTATGCTTACCGGCGGGATATTCTTGAAGCGGTCCATTTTCAACAGataaTGGTATTAATTGGAGAGACTGGTTCAGGGAAGAGCACGCAACTGGTACAGTTTTTGGCTGATTCAGGCATTGGTACTGACAAGTCCATTATATGCACCCAACCTCGCAAGATTGCTGCCAAATCTTTGGCACATAGGGTCCAGGAAGAAAGTAGTGGCTGTTATGAAGATAATTCAATCAAGTATTGttcaatattttcatcttcatgtGAATTTGACTCAAAAGTAATATTCATGACCGACCACTGTCTACTGCAGCACTACATGAATGATAAGAATTTGTCTGGGATCTCATGCATCATCATTGATGAAGCTCATGAAAGGAGCCTAAATACAGATCTTCTACTGGCGTTGATCAAGAGTTTACTCTGTAGAAGGATTGATCTGAGGCTTATTGTTATGTCTGCCACAGCTGATGCAAAGCAGCTATCTGATTACTTTTATGGTTGTGGTATTTTTCATGTGGTTGGGAGAAACTTTCCAGTTGAGGTGAGATACGTTGTTTATGAATCTTCTGGACATTCTGGTTCTTCTGTTATTGCTTCTTATGCATATGATGTTGTGAGGATGGCGACTGAGGTTCacaaaacagagaaagaggGAACTATTCTTGCCTTTTTAACCTCTCAGGCAGAAGTGGAATGGGCCTGTGAAAAGTTTGCAGCTCCCTCTGCAATTGCTTTGCCCTTGCATGGCAAACTTTCTTCTGAGGAGCAATTCCGTGTATTCCGGAACTACcctgggaaaagaaaagtcataTTTGCAACTAATCTTGCAGAGACCTCATTGACAATTCCTGGTGTCAAGTATGTGATAGATTCTGGGTTGCTTAAGGATAGTAGATTTGAACCTGGCAGTGGTATGAATGTTCTTAAAGTTTGCTGGACCAGCCAGAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGCAGGTGCTATAGACTCTATTCTGAATTCGATTATGAGTCTATGGCACCTAATCAAGAACCCGAGATTCAACGAGTTCATCTTGGTATAGCAGTTTTGAGGATCCTAGCTTTGGGAATAAAGAACGTACAGGATTTTAAGTTTGTAGATGCTCCCAGTCCTAGTGCTATTGACATGGCAATCAGGAATCTAATTCAACTGGGGGCAATTAGACTAAACAATTCTGTTCCTGAACTAACTGATGAAGGTAGGTACCTGGTCAAAATGGGGATTGAGCCTAGGCTTGGTAAACTTATTCTTGGTTGtgtcaattttaatttgggtAAAGAAGGCCTTGTGCTTGCTGCTGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTTGGTAGTGATGATGATAAACAAAGATCTGATTGTCTCAAGGTGCAATTTTGCCATAGCAATGGTgaccttttttctcttctctctgtgTACAAGGAATGGGAATCATTGCCTTCAGGGCGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCTTGAGGAGATGCCAAGACACAATCATGGAACTGGAACTTTGCCTTCAGAAtgaacttaattatattattccaAGTTACTGGCACTGGGACCCTTATAAGTTCACCGATCATgataagaatttgaaaaaggtTATGCTGTCCTCACTTGCTGAAAATATTGCCATGCACTCTGGCTGTGACCAACTTGGTTATCAAGTTGCATCATCTGGGCAACATGTTCAACTGCATCCATCTTGTTCATTGCTGGTATTTGCTCAGAAACCTAGTTGGGTTGTTTTTGGTGAGCTACTTTCAATTTCCAACCAATATTTGGTCTGTGTTAGTGCTTTTGACTTTGAATCATTGTTCTCCCTTTTCCCTACTCCCTTGTATGATGTTTCCAAGATGGAAAGAGAGAAGTTGCAAAGGAGGGTCTTGACTGGTTTTGGCAGTACACTGCTCAAGAGGTTTTGTGGGAAAGCCAACAGTAGTCTGCTTGGTCTTCTATCACGTGTACGAACAGCTTGTAAGGATGAATGCATCTTCATTGAAGTCAACATTGACCACAATGAGATTCAATTGTATGCCACATCACATGATATTGAAGTGGTCCTTGAGTTAGTTAGTGATgctttaaaatatgagagaaaaTGGTTGCATAGTGAATGCATGGAGAAATGCCTGTATCATGGTTCTGGTGTCTCACCTTCAGTAGCTTTGTTTGGGTCAGGTGCTGAGATAAAGCATTTAGAACTTGATAAGCGTTGCTTGAGTGTTGATATATGTCATCCAAATATAAATGCAGTTGATGATAAGGAGCTGTTGATGTTTCTTGAGAAGAATACCTCTGGTAGTATCTGTTCTGTGAACAAGTTCACTGGCATAATACAGAATGTTGAAGATAGGGAAAAGTGGGGCAGAGTAACGTTTCTCTCCCCTGATGCTGCTAAAAGAGCTGTAGAGCTAGATGGTGAGGGTTTTTATGGCTCTTTGAAAATAGTTCCTTCACAGACAACTAGCGGAGGGGATAAGACATTGTCATTTCCTGCTGTTAAAGCTAAAATTTATTGGCCTCGTAGGCCCAGCAAAGGATTTTGCATAGTAAAATGTGACAAACAGGATGTTGATTTCATCTTGAGGGATTTCTGTAACCTTGTAATAGGAGGAAGGCATGCTCGATGTGAAGCTAGCAAAAGGTACTCTGATAGTGTTGTAATTGCTGGGCTTGATAAAGAACTCTCTGAAGGTGAAATTTTAGATGTTCTAAGAACTGCTACAAAAAGGaggattttggattttttcttGGTGAGGGGAGAAGCTGTTGGGAATCCGCCATGTGGTACTTGTGAAGAGGCACTCCTGAAAgaaatttctccttttatgCCAAAAACAAGTCCCCACATTAATTCTTGCCGAGTCCAGGTATTCTCACCTGAGCCAAAGCAGGCTTTCATGAAAGCTTTGATCACCTTTGATGGAAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAGGTGTTGTCTGGATGCTTGTCGTGGCAAAAGATAAAGTGTCAGCAGTTGTTTCATAGCTCCTTGACAATCCCTATTCATGTGTATCGTGTGATCAAGGAACAcctagataaaatttttgcaagctTCAGCTCTATTACTGgtCTTGAGTGCAACCTAGAAAAGACATTTAACGGTTCCCATCGAGTGAAGATATCAGCCAGTGCCACAAGGACGGTGGCCGAAGTTAGGAGACCTCTGGAAGAACTCACAAGAGGGAAAACTATTGACCATGAAAGCCTCATTCCTACAGTTCTGCAGCTTCTGTTGTCCAGAGATGGCATTAGTCTTAAAACTTCAATACAGCAGGAGACAGGAACTTACATTCTTTTTGATAGGCACAACCTAAAGTTACGGGTGTTTGGTTCTCCAGAAAACGTTTCTGTGGCTGAGCAGAAGCTGATTCAATCCCTACTCTCTCTCTATGAAAGTAAGCAGCTAGAAATCCATCTTCGAGGGACAGATCTTCCTTTTGACCTAATGAAGCAAGTAGTTAAGAACTTTGGGCCTGATCTTCGAGGGCTAAAAGAGAAGGTACCTGAGGCAGACTTTACTCTCAACACACGACGCCAGATAATCTCTTTTCATGGTAACAGGGAGTTGAAACCGAAAGTAGAGGAATTAATTTACGGGATTGCCCAATCAGGACAATGCTTGATTGAGAAACTTAAGACTGGATCAGATTGTCCAATTTGCTTGTGTGAGATTGAGGATGGATATCAACTCGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAGCAATGTGAATCCGCTATAAGAAATCAAGGTAGTTTCCCAGTTTGTTGTGCTCACGAGGGCTGTAGGGATCCCATTCTGCTTACAGATTTGAGATCGCTTCTGTCAAATGAAAAGTTGGAGGAACTTTTCAGAGCAGCTTTGGGAGCTTTTGTAGCATCCAGGGGGGGCACTTACAGGTTTTGCCCATCTCCTGATTGCCCTTCAATTTATCGAGTTGCAGAACCTGGGACAGGTGGTGAGCCATTTGTTTGCGGAGCATGTTATGCAGAGACTTGTACAAGATGCCACTTAGAGTACCATCCCTATCTTTCATGCGAGAGATACCGGGAGTTCAAAGAAGATCCAGACTCATCTTTGAAGGAATGGTGCAAAGGGAAAGAGCATGTTAAGGGCTGTCCTGCGTGTGGGTATACAATTGAGAAAGTAGATGGGTGTAACCACATTAAATGCAAGTGCGCGAAGCATGTATGTTGGGTTTGTCTGGACTTCTTTGAAACTAGTGATGATTGCTATAATCATTTGAGAAATATACACATGGCCATTATATA 5207 0.4162 MKKTYRSTLFRGNPDFNRRTYAPRNYRGPVYNSYYHRQTEHFDRPLEHNAPLRCVNFVVELHSGSRGFSREHVESLIAKCTPKAENFCFHPSDHVAAALHFSQWVDTLNAIACLWEFRLNEVHNFTPELTSYVLVPSDMDELQGCLRSLFADHVKSLMEGKEVKMWLEKIKPISKEIKKLSGLLTKPKNIPLMNELRQKKQGLDAEKLLIERRVNEFQTAMKRILHYVEENNREETDEDVFPILKLDGSLNWKRVHSLIKRERRRLEDGLPIYAYRRDILEAVHFQQIMVLIGETGSGKSTQLVQFLADSGIGTDKSIICTQPRKIAAKSLAHRVQEESSGCYEDNSIKYCSIFSSSCEFDSKVIFMTDHCLLQHYMNDKNLSGISCIIIDEAHERSLNTDLLLALIKSLLCRRIDLRLIVMSATADAKQLSDYFYGCGIFHVVGRNFPVEVRYVVYESSGHSGSSVIASYAYDVVRMATEVHKTEKEGTILAFLTSQAEVEWACEKFAAPSAIALPLHGKLSSEEQFRVFRNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLLKDSRFEPGSGMNVLKVCWTSQSSANQRAGRAGRTEPGRCYRLYSEFDYESMAPNQEPEIQRVHLGIAVLRILALGIKNVQDFKFVDAPSPSAIDMAIRNLIQLGAIRLNNSVPELTDEGRYLVKMGIEPRLGKLILGCVNFNLGKEGLVLAAVMANASSIFCRVGSDDDKQRSDCLKVQFCHSNGDLFSLLSVYKEWESLPSGRKNKWCWENSINAKSLRRCQDTIMELELCLQNELNYIIPSYWHWDPYKFTDHDKNLKKVMLSSLAENIAMHSGCDQLGYQVASSGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFESLFSLFPTPLYDVSKMEREKLQRRVLTGFGSTLLKRFCGKANSSLLGLLSRVRTACKDECIFIEVNIDHNEIQLYATSHDIEVVLELVSDALKYERKWLHSECMEKCLYHGSGVSPSVALFGSGAEIKHLELDKRCLSVDICHPNINAVDDKELLMFLEKNTSGSICSVNKFTGIIQNVEDREKWGRVTFLSPDAAKRAVELDGEGFYGSLKIVPSQTTSGGDKTLSFPAVKAKIYWPRRPSKGFCIVKCDKQDVDFILRDFCNLVIGGRHARCEASKRYSDSVVIAGLDKELSEGEILDVLRTATKRRILDFFLVRGEAVGNPPCGTCEEALLKEISPFMPKTSPHINSCRVQVFSPEPKQAFMKALITFDGRLHLEAAKALEQIEGKVLSGCLSWQKIKCQQLFHSSLTIPIHVYRVIKEHLDKIFASFSSITGLECNLEKTFNGSHRVKISASATRTVAEVRRPLEELTRGKTIDHESLIPTVLQLLLSRDGISLKTSIQQETGTYILFDRHNLKLRVFGSPENVSVAEQKLIQSLLSLYESKQLEIHLRGTDLPFDLMKQVVKNFGPDLRGLKEKVPEADFTLNTRRQIISFHGNRELKPKVEELIYGIAQSGQCLIEKLKTGSDCPICLCEIEDGYQLEGCGHLFCRLCLVEQCESAIRNQGSFPVCCAHEGCRDPILLTDLRSLLSNEKLEELFRAALGAFVASRGGTYRFCPSPDCPSIYRVAEPGTGGEPFVCGACYAETCTRCHLEYHPYLSCERYREFKEDPDSSLKEWCKGKEHVKGCPACGYTIEKVDGCNHIKCKCAKHVCWVCLDFFETSDDCYNHLRNIHMAII 1735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01719 1735 Pfam AAA domain 286 422 IPR003593 -
Bva05g01719 1735 ProSitePatterns Zinc finger RING-type signature. 1542 1551 IPR017907 -
Bva05g01719 1735 ProSiteProfiles Zinc finger RING-type profile. 1526 1568 IPR001841 -
Bva05g01719 1735 ProSitePatterns Zinc finger C2H2 type domain signature. 1710 1731 IPR013087 -
Bva05g01719 1735 PANTHER ATP-DEPENDENT RNA HELICASE 19 1665 - -
Bva05g01719 1735 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 824 902 IPR011709 -
Bva05g01719 1735 ProSiteProfiles TRIAD supradomain profile. 1522 1730 IPR044066 -
Bva05g01719 1735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 444 IPR014001 -
Bva05g01719 1735 Pfam Helicase associated domain (HA2) 661 738 IPR007502 GO:0004386
Bva05g01719 1735 CDD DEXHc_RHA-like 287 443 - -
Bva05g01719 1735 SMART ha2_5 660 756 IPR007502 GO:0004386
Bva05g01719 1735 SMART ultradead3 268 453 IPR014001 -
Bva05g01719 1735 CDD SF2_C_RHA 448 608 - -
Bva05g01719 1735 Gene3D - 1654 1733 - -
Bva05g01719 1735 Coils Coil 193 213 - -
Bva05g01719 1735 Pfam Helicase conserved C-terminal domain 483 599 IPR001650 -
Bva05g01719 1735 SMART helicmild6 502 600 IPR001650 -
Bva05g01719 1735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1522 1602 IPR013083 -
Bva05g01719 1735 Gene3D - 225 446 IPR027417 -
Bva05g01719 1735 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 386 395 IPR002464 -
Bva05g01719 1735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 778 IPR027417 -
Bva05g01719 1735 SUPERFAMILY RING/U-box 1609 1663 - -
Bva05g01719 1735 SUPERFAMILY RING/U-box 1680 1726 - -
Bva05g01719 1735 Pfam IBR domain, a half RING-finger domain 1602 1658 IPR002867 -
Bva05g01719 1735 Gene3D - 447 620 IPR027417 -
Bva05g01719 1735 Gene3D - 643 748 - -
Bva05g01719 1735 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 19 1665 - -
Bva05g01719 1735 SMART ibrneu5 1659 1723 IPR002867 -
Bva05g01719 1735 SMART ibrneu5 1593 1658 IPR002867 -
Bva05g01719 1735 SUPERFAMILY RING/U-box 1525 1598 - -
Bva05g01719 1735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 640 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01719 Bva-Chr5 13802952 13809621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01719 1542 1713 ARIADNE family AT3G27710 30.286 9.57e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01719 K12818 - gmx:100810008 2536.52