Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01709 ATGGAGGAGGAAGAACACGAGGTATACGGAGGCGAGATCCCAGACGTCGGAGAGATGGAAGGAGAGATGGACTCTCACCATGCCGATGTTGACATGTCCGCTGCCGACGATGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGAGATTGAAGGAGATGGAAGAGGAAGCTGCAGCTCTCCGTGAAATGCAGGCCAAGGTCGAAAAGGAGATGGGTGCAGTTCAAGATCCTGCTAGCGCAGCTGCTTCTCAGGCAAGCAGGGAGGACACAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTACAGCAACACTTCCAATCATGTGGCACGGTGAACAGGGTCACCATCCTTACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCATACGTGGAATTCATTGAAACCGAAGCTGTTCAAGAGGCTATCCTCCTGAATGAATCTGAATTACATGGCCGTCAACTAAAGGTTTTGCCTAAGAGGACTAATATACCTGGAATGAAACAGTACCGTCCTAGTCGTTTCAATCCTTACATGGGTTACCGTTTCAGGAGGCCATATCCTCCCCCGTACTTCTACTCTCCTTATGGATATGGGAAGGTTCCAAGATTTAGAAGGCCATCACGGTACATGCCTTACTATTA 665 0.4827 MEEEEHEVYGGEIPDVGEMEGEMDSHHADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQASREDTDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFIETEAVQEAILLNESELHGRQLKVLPKRTNIPGMKQYRPSRFNPYMGYRFRRPYPPPYFYSPYGYGKVPRFRRPSRYMPYY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01709 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Bva05g01709 221 MobiDBLite consensus disorder prediction 1 25 - -
Bva05g01709 221 MobiDBLite consensus disorder prediction 69 92 - -
Bva05g01709 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 219 - -
Bva05g01709 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Bva05g01709 221 SUPERFAMILY RNA-binding domain, RBD 83 192 IPR035979 GO:0003676
Bva05g01709 221 SMART rrm1_1 94 165 IPR000504 GO:0003723
Bva05g01709 221 CDD RRM_II_PABPs 94 165 - -
Bva05g01709 221 Gene3D - 28 165 IPR012677 -
Bva05g01709 221 Coils Coil 36 70 - -
Bva05g01709 221 PANTHER - 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01709 Bva-Chr5 13712484 13716527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01709 94 189 Eukaryotic Initiation Factors Gene Family AT2G36660 30.208 2.13e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01709 K14396 - jre:109014561 333.954