Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01678 ATGACTGAGAATTCTAAAGAGAGGAGATCTGGCTGTGGGATTTTGAGTGCAGTGTTTGGGCGACGCAGTGTATGGGGAAGAAAAACAGGTTCCACAGATTTTGGCAACAATAATGGCAGCGATTTTGGCAAGGCACTACCAAACAACATTAACAATCCAAAAAGGCGGCGAGCCGATTCTAAGGAGTTCATTGTGCTTGATTCATCATCTTCGTGTAATGCTACAACTTCAAAGGTTGTTTCTGCCACCAAGCCTGAAACCAATCCCAACAGGGCAACCTCAAACCCTGTCCAAGTCCAACCCAGAAAGATTCGGCAGGAAACAGCAAAGACAAGCACATCTAAAATGGGACCAAGCCAAGGTAATGTCAACCAGGGAAAAAGGGTAACAGAGGAAGCCATTGGCCTCTCCGGTGAACTCGAAAGCATGATCACCGATCACCAGAAAACCAAGGGCAGCAGTGTCCTTCTCCGGGCTTCATCCAGCAATGTGATGCTCTATGGCAATTTAGGTAATTTGAGACAAGGAGGAGGAGGGAATACTGATTCTTCTTACAATGTAACTGCTCACACTCCAAAGGTTTCCCAGGAAAGCCAAGTTGGGAATGGAAGATACACGAACCATGCAGTGGAAACTGCCAATAATAGAGTTAGTAAAGAAGGGAAAAGCAAGCAAGAACAACAATCTGGTTCTCTATGCAGGGCTTTGTCTACTAGAATGGATCCAGAGCAATTGAAGATAATGGGCAACGAGGATTATAAGAATGGTAGATTTGCTGAGGCTTTGGCTCTTTATGATGCTGCAATCTCTATTGACCCCAACAAGGCTTCGTATAGGAGCAACAGAAGTGCAGCATTAACAGCTCTTGGTAGGATTCTCGAGGCTGTGTTTGAGTGCAGAGAAGCTATTCAAATCGAACCTAATTACCTTAGAGCTCATCACCGACTTGGAAATTTGTACCTCAGATTGGGAGAGACAGACAAGGCGCAATATCATTTTAAACGTGCAGGAGCAGAGGCCGATCCTGATGAAATTGCTAAAGTGAAGATTCTTCAGACCCATCTAAACAAGTGCACCGAGGCTCGTAGGTTACGAGATTGGAACACCTTGATAAAGGAGACGAATGGCGCAATATCAGCTGCAGCAGATTCTGCTCCACAGATATTCGCTTTGCAAGCTGAAGCCCTCTTGAAGCTCCATAAGCATCAAGATGCAGACGAAGCAATATCAAGAGGCCCTcattttgatgatgaagagtGTATAAAGTTCTTAGGACCAGTTGGTTATGCAAGTGTCTTGGTGACAAGGTCTCAGGTTGATTTGGCTGTTGGCAGATTTGATGAAGCTTTAGAGGCAGCTCAACGAGCAGCTAAGCTTGACTCGAATAATAGGGAAGCAAACATGGTGTTGCGAAGGTCTCGAGCAGTAGCAGCAGCTCGAACAAATGGAAACCAGCTTTTCAAGGCATCAAAATTCTATGAGGCATTTGCTGCCTATGCAGCGGGCCTTGAGCATGATCCTTATAACTCAGTTTTGCTGTGTAACCGTGCCGCTTGTCGATCAAAGCTGGGTCATTACGAAAAAGCTGTGGAAGATTGCACAGTGGCCCTTAACCTGCGTCCATCTTATAGCAAGGCCAGATTAAGAAGAGCTGATTGTAATGCCAAGTTGCAAAGATGGGAAGCTTCAATACAAGAGTACGAAATCTTATTAAGACAAACACCAGAAGATGAGGAAGTAAAGCAGGCCTTAGCAGAGGCGCAAGAACAACTGCAGAAACGGCAAGGTTA 1790 0.4486 MTENSKERRSGCGILSAVFGRRSVWGRKTGSTDFGNNNGSDFGKALPNNINNPKRRRADSKEFIVLDSSSSCNATTSKVVSATKPETNPNRATSNPVQVQPRKIRQETAKTSTSKMGPSQGNVNQGKRVTEEAIGLSGELESMITDHQKTKGSSVLLRASSSNVMLYGNLGNLRQGGGGNTDSSYNVTAHTPKVSQESQVGNGRYTNHAVETANNRVSKEGKSKQEQQSGSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAISIDPNKASYRSNRSAALTALGRILEAVFECREAIQIEPNYLRAHHRLGNLYLRLGETDKAQYHFKRAGAEADPDEIAKVKILQTHLNKCTEARRLRDWNTLIKETNGAISAAADSAPQIFALQAEALLKLHKHQDADEAISRGPHFDDEECIKFLGPVGYASVLVTRSQVDLAVGRFDEALEAAQRAAKLDSNNREANMVLRRSRAVAAARTNGNQLFKASKFYEAFAAYAAGLEHDPYNSVLLCNRAACRSKLGHYEKAVEDCTVALNLRPSYSKARLRRADCNAKLQRWEASIQEYEILLRQTPEDEEVKQALAEAQEQLQKRQG 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01678 596 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515
Bva05g01678 596 ProSiteProfiles TPR repeat profile. 242 275 IPR019734 GO:0005515
Bva05g01678 596 Pfam TPR repeat 249 290 - -
Bva05g01678 596 Gene3D Tetratricopeptide repeat domain 240 596 IPR011990 GO:0005515
Bva05g01678 596 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 595 IPR044534 -
Bva05g01678 596 Pfam Tetratricopeptide repeat 312 343 IPR019734 GO:0005515
Bva05g01678 596 MobiDBLite consensus disorder prediction 29 47 - -
Bva05g01678 596 Pfam Tetratricopeptide repeat 522 577 - -
Bva05g01678 596 Coils Coil 550 570 - -
Bva05g01678 596 MobiDBLite consensus disorder prediction 76 125 - -
Bva05g01678 596 MobiDBLite consensus disorder prediction 29 55 - -
Bva05g01678 596 SUPERFAMILY TPR-like 481 594 IPR011990 GO:0005515
Bva05g01678 596 PANTHER OS01G0616333 PROTEIN 5 595 - -
Bva05g01678 596 SMART tpr_5 276 309 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 430 463 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 476 509 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 310 344 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 544 577 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 242 275 IPR019734 GO:0005515
Bva05g01678 596 SMART tpr_5 510 543 IPR019734 GO:0005515
Bva05g01678 596 SUPERFAMILY TPR-like 242 466 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01678 Bva-Chr5 13524080 13527465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01678 243 377 U-box Gene Family AT3G07370 30.612 3.49e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01678 - - qsu:111999632 717.998