Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01649 ATGAATTCTCCATCGACGCAATTCGTTTCCTCAAGAAGGATGAGTGTATATGATCCTATCCACCAGATTAATATGTGGGGAGAAAACTTCAAAACTAATGGTAGCTTAAGTCCATCCGTGCCCTTAATCGGTGAGGAAGACGTGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAACATTGGGAACATCTAGGAAGTTTGACCAAGAAGCTAATAAATCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGGGAGGCTGCTCGTAAGAGCCGTCTAAGGAAAAAGGCCTACGTGCAGCAGTTGGAAACAAGTCGTCTGAAGCTGATGCAGATGGAGCAAGAGCTTGACCATGCAAGACAACAGGGATTATATATAGGTGGTGGACTAGATTCTAATCAGTTGGGTTATGCTGGATCTGTAAATTCAGGTATTGCAACCTTTGAGATGGAGTATGGACACTGGGTAGAAGAACAAAACAGACAGATCCTTGAAATGAGAACTGCTTTAAGTTCACATATTGGTGACATAGAGCTCAGGATACTTGTAGATGGTATCATGAGCCACTATTTTGAACTCTTCCGCATGAAATCCACAGCTGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTTTGTGGAAAACAACAGCTGAACGGTTTTTCTTATGGATTGGAGGGTTTCGCCCTTCAGAACTTCTAAAGGTTCTTGTCCCTCTGATTGAACCCTTGACAGAACAACAACTAGTGGATGTCCAAAATCTTGGACAATCCTGTCAGCAAGCAGAAGATGCTCTTTCACAAGGTATGGACAAACTCCAGCAAACACTTGCTGAAACAGTAGCAACTGAACAACTAGTTGAAGGAATTTATATTCCACAGATGGCTAGAGCGATGGAAAAGTTGGAAGCTTTGGTGAGCTTTGTAAACCAGGCTGACCATCTTCGGCAAGAAACGTTGCTGCAAATGTCTCGAATCCTTACAACCCGTCAAGCAGCTCGATACCTACTTGCTTTGGGGGAATATTTCCAGCGCCTCAGGGCTTTGAGCTCACTTTGGGCTAATCGTCCTCGCGAACCTGCTTA 1088 0.4329 MNSPSTQFVSSRRMSVYDPIHQINMWGENFKTNGSLSPSVPLIGEEDVKLDSQSEDASHGTLGTSRKFDQEANKSIDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQMEQELDHARQQGLYIGGGLDSNQLGYAGSVNSGIATFEMEYGHWVEEQNRQILEMRTALSSHIGDIELRILVDGIMSHYFELFRMKSTAAKADVFYVMSGLWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQLVDVQNLGQSCQQAEDALSQGMDKLQQTLAETVATEQLVEGIYIPQMARAMEKLEALVSFVNQADHLRQETLLQMSRILTTRQAARYLLALGEYFQRLRALSSLWANRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01649 362 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Bva05g01649 362 Coils Coil 97 124 - -
Bva05g01649 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Bva05g01649 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Bva05g01649 362 SUPERFAMILY Leucine zipper domain 78 117 IPR046347 GO:0003700|GO:0006355
Bva05g01649 362 Pfam bZIP transcription factor 78 107 IPR004827 GO:0003700|GO:0006355
Bva05g01649 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Bva05g01649 362 Gene3D - 77 126 - -
Bva05g01649 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Bva05g01649 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Bva05g01649 362 MobiDBLite consensus disorder prediction 50 71 - -
Bva05g01649 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Bva05g01649 362 MobiDBLite consensus disorder prediction 55 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01649 Bva-Chr5 13356339 13361629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01649 1 361 Calmodulin-binding Proteins AT5G65210 71.390 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Bva05g01649 DOG1 3.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01649 K14431 - gmx:100793353 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01649 05 13356339 13361629 Bva05g01649 05 13356339 13361629 ECH
Bva05g01649 05 13356339 13361629 Bva10g01165 10 8290343 8296197 ECH