Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01604 ATGTCTGCTATGGTGTCCGCTTTGACCCATGTTGTTTCTGGAGATGTCCCTGATGATCATAGCCTTCTTCTGCATCATCAGCAACAGGGTGCAATTGAAGAACTTCATGCTCCACCTGTTGCATTAAACTTCAACAGTACGGCTTCTCTTTCTGCAActccttcctcttcttctgctCTCAAGAGAAGTAGGCAAGATGATGTTTCAACATTTGAACAAGGTTCAAGCGACTGGAGCAGAAGAATGGGCAATTGCGTGTATGAATACAGTAGAGAGAATGCGAGGGAGGGAGAGCAAGAGCACGAGCAGCCGAGGAGAAAATACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCAGCCGAAATCAGAGACCCATTCAAGGCAGCAAGAGTGTGGTTAGGCACATTCGACTCAGCGGAAGCAGCTGCCAGAGCATACGACGAAGCAGCCTTGCGTTTTAGAGGCAACAAAGCAAAACTCAATTTCCCTGAAAATGTCACACTCCGGCAGCAACATCAGCAGCAGTATCCCCTTCCCGTCTATGCTGCTCCGGCGAACCAATTGAGCATTTCAAATCCTCCGGCTTCAATCGTCGTCTCCATTCCGACGTCTACTGAGCCAATCATCCACACACAAGCACCGCTTCACCATTCTCACAGTTCCCAGCCTTCAAACAATTTTTACGATTATTCTCAGTTTGCAGAGTTCCCAATGAATATGTATGATGAGATGATTCTATCAACTACTAGTACCTCTTCACTTTATTCCGGGCAGTTCACACCGTCCACGGCGGAGACAAGTGGTGGTTCACATTATGAACCGTCCGTATCAGAATG 839 0.4684 MSAMVSALTHVVSGDVPDDHSLLLHHQQQGAIEELHAPPVALNFNSTASLSATPSSSSALKRSRQDDVSTFEQGSSDWSRRMGNCVYEYSRENAREGEQEHEQPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDSAEAAARAYDEAALRFRGNKAKLNFPENVTLRQQHQQQYPLPVYAAPANQLSISNPPASIVVSIPTSTEPIIHTQAPLHHSHSSQPSNNFYDYSQFAEFPMNMYDEMILSTTSTSSLYSGQFTPSTAETSGGSHYEPSVSE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01604 279 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Bva05g01604 279 PANTHER DNA-BINDING DOMAIN 1 264 IPR044808 GO:0003700|GO:0009873
Bva05g01604 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 1 264 - -
Bva05g01604 279 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Bva05g01604 279 MobiDBLite consensus disorder prediction 257 279 - -
Bva05g01604 279 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Bva05g01604 279 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Bva05g01604 279 MobiDBLite consensus disorder prediction 52 77 - -
Bva05g01604 279 CDD AP2 107 166 IPR001471 GO:0003700|GO:0006355
Bva05g01604 279 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Bva05g01604 279 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Bva05g01604 279 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01604 Bva-Chr5 13064005 13065378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01604 1 245 AP2-EREBP Transcription Factor Family AT5G64750 40.221 5.87e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva05g01604 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01604 - - lang:109338199 225.713