Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01602 ATGGAATTCGACGAGTACGATTACTTAGAGAAGACCGTGGAGGAGCTGGAAGATCGAGATTcgacgaagaagaagaaggagagcAGTGACAAGAGTGAACGGAGTTACAGGAAGCGTGATGTCGACGAGGATCTGGACGGTGAAGACAGGAAGAGCAAGAAGTCCAGAGGCGATGATGAGAATGGAACAAGGAAGGATCGTGATGACCGCGACAGAGAACGGTCTAATCGTGAAAAGGAGCGGCATAGGAGTGGCAGGGAGAGGGACGAAGAAAGAGAGCGAGAGAGGAGTAGTAAGGAGAGAGACCGAGACAGAGATAGAGATAGGGAGAAGGATagggagaaagagagggaTAAGGACAGGGAGAgggatagagaaagaaaggataaAGAGAGGGAGcgggagaaagaaagagagagggagaggagagagagggatagggagagggaaagagaacgggagagaagagagagggagGAGAGAGATAGGTCCAGGAGAAGCAGAAGTCGTTCCGATCGAGATAGAGACAAAGACCGAGAATTAGAAATGAGAGATGGCAGGAAGTTtagggaaaagaaagaggcCGTGGAGCCGGAGGCAGATCCAGAAAGGGATCAGAGGACTGTTTTTGCATACCAGATGCCCCTAAAGGCTACAGAGAAAGATGCTTTTGAATTCTTCTCAAAGGCTGGCAAGGTGAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGGTCAAAAGGAGTCGGCATTGCGAAAATGATGAGGGATGATGGGAATACCTTGCTCTCATGTTTAATCAATTCATGCTGCGTACCCAAGGTAGATGACATAATCCTGGTTTTGCTTTTTGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTTCATCTCTTTGCTGTATGCTTTgtatattgaattttttgacgCAATGTCTGTACCAATGGCAATTGCTCTCTCTGGCCAACTGCTTCTTGGACAGCCTGTAATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCAGTGGAGGTGCTGGTGTTACAGGACCATATGGAGCAGTTGATAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAAAGTCAGTTGAGAGAGATTTttgagccatttggtccagtGGAGCTTGTGCAATTGCCTCTTGACCTGGAGACAGGACATTGCAagggttttggttttgttcaaTTTGCCCATCTTGAACATGCCAAGGCAGCACAAAGTTTGAATGGGAAGTTAGAGATTGCTGGCCGAACCATCAAGGTTTCTTCTGTAACGGATCATGTTGGAACCCAAGATGCCGCTGCTAAATCTGctgattttgatgatgatgaaggtGGATTGTCTTTAAATGCCCAATCGAGAGCAATGCTTATGGCAAAGCTGGACCGCACTGGTATTGCGACAAGCATTGCAGGATCTATGGGGGTGCCCATTGCAAATGGATCAGCTACTGCTCAACCGGCCGTTAGCTTGCCTTTTGGTGGGCCGGGTGTAATACATGCACCAGCTCTCCCAACGCAAGTTATGCCTACCCCTGTGGCAGAACCAGTAGGAACCCCCAGTGAGTGTTTACTCCTGAAGAATATGTTCGATCCAGTGACTGAGACAGAGCCAGATTTTGATGTGGACATTAAAGAGGATGTAGAGGAAGAATGTTCCAAGTTTGGCAGGGTGAAACATATTTACATTGACAAAAGAAGTGCTGGTTTTGTCTATATGAGGTTTGAAACAGTGGAAGCTGCAAGTGCTGCGCAGCGTTCATTGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTGTTTTCATGCAACCGCAGATATATGAAGCCAAGTTTAAAGGATA 1907 0.408 MEFDEYDYLEKTVEELEDRDSTKKKKESSDKSERSYRKRDVDEDLDGEDRKSKKSRGDDENGTRKDRDDRDRERSNREKERHRSGRERDEERERERSSKERDRDRDRDREKDREKERDKDRERDRERKDKEREREKERERERRERDRERERERERREREERDRSRRSRSRSDRDRDKDRELEMRDGRKFREKKEAVEPEADPERDQRTVFAYQMPLKATEKDAFEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFFDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGGAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGTQDAAAKSADFDDDEGGLSLNAQSRAMLMAKLDRTGIATSIAGSMGVPIANGSATAQPAVSLPFGGPGVIHAPALPTQVMPTPVAEPVGTPSECLLLKNMFDPVTETEPDFDVDIKEDVEEECSKFGRVKHIYIDKRSAGFVYMRFETVEAASAAQRSLHMRWFARRLITAVFMQPQIYEAKFKG 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01602 575 PANTHER CC1-LIKE SPLICING FACTOR 1 575 - -
Bva05g01602 575 Gene3D - 141 294 IPR012677 -
Bva05g01602 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Bva05g01602 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 559 IPR000504 GO:0003723
Bva05g01602 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 381 IPR000504 GO:0003723
Bva05g01602 575 MobiDBLite consensus disorder prediction 12 205 - -
Bva05g01602 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Bva05g01602 575 CDD RRM3_RBM39_like 482 564 - -
Bva05g01602 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Bva05g01602 575 Coils Coil 127 162 - -
Bva05g01602 575 CDD RRM2_RBM23_RBM39 311 383 - -
Bva05g01602 575 Gene3D - 478 575 IPR012677 -
Bva05g01602 575 SUPERFAMILY RNA-binding domain, RBD 478 565 IPR035979 GO:0003676
Bva05g01602 575 SUPERFAMILY RNA-binding domain, RBD 309 385 IPR035979 GO:0003676
Bva05g01602 575 MobiDBLite consensus disorder prediction 1 205 - -
Bva05g01602 575 CDD RRM1_RBM39_like 208 280 - -
Bva05g01602 575 Gene3D - 305 401 IPR012677 -
Bva05g01602 575 SMART rrm1_1 310 383 IPR000504 GO:0003723
Bva05g01602 575 SMART rrm1_1 208 280 IPR000504 GO:0003723
Bva05g01602 575 SMART rrm1_1 484 561 IPR000504 GO:0003723
Bva05g01602 575 SUPERFAMILY RNA-binding domain, RBD 200 303 IPR035979 GO:0003676
Bva05g01602 575 TIGRFAM SF-CC1: splicing factor, CC1-like family 86 573 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bva05g01602 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 402 501 IPR029123 -
Bva05g01602 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01602 Bva-Chr5 13043530 13049428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01602 281 382 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 7.10e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01602 K13091 - gmx:100802446 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01602 05 13043530 13049428 Bva10g01116 10 8012671 8023218 ECH
Bva05g01602 05 13043530 13049428 Bva05g01602 05 13043530 13049428 ECH