Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01598 ATGAGACCGCTTCTTCCGAGGaatctcttcctcttcttacCTCATTCCTCATCGCTGGCTCGtgcatttcttcttcaaatctCTCACTTTTCAGGCTCTTCCAATTCCCCATCACATTTTCCATCTTACTCCAGACGTCAGGACGAGGAGTCACGGAATGTGCGGGTTGCTGTCTGGTGGGATTTTGAGAATTGCCATTTGCCTGCTGGTGTTAATGTTTTCAGAATCGCGCACGCTATAACTGAAGCTGTCAGGGCTAATGGGATTAAGGGTCCCATTCAAATCACAGCTTTCGGTGATGTTTTGCAGCTTTCAAGGGCGAATCAAGAGGCCATGTCTTCGACTGGGATTAATCTCACCCATATTCCTAACGGTGGAAAGAATAGTGCTGATAGATCTCTTCTAGTTGATCTTATGTATTGGGTTTCCCAAAATCCTCCACCAGCACATCTGTTTCTGATTTCTGGTGATAGAGACTTTGCTGGCATCTTGCACCGCTTGAGAATGAGTAACTACAATATCTTGCTTGCAAGTCCAGAAAGAGCTCCTAATGTTCTCTGCAGTGCAGCAACTATAATGTGGCACTGGAGTTCATTGGTTAAAGGAGAAAATCTTGCTGGGAAACGATACAACTATCCTCCTGATGGTCCCTATGGATCTTGGTATGGCCACCACAAGGTGCCTCTTGAAGACCCCTTCTTGGCTAGTGAGCAGTCTACTAGTTCACAAAGTGAGGAGATATCTGAAACTACGACTGACACAAAGTTACGTCCAGTTCCAAAGGCCATTGTGAAGCGGATTcagaatatattaaattcataTCCAAAAGGGCTCTCCTTATCAGATCTTCGTGCGGAGTTGGCAAAAACTGATGTGATCTTAGACAAAGATTACTATGGACACAAAAAGTTCTCTCGCCTTCTTTTATCAATGCCACAAATTGTCCAGATTCGTGTTGGACCTGATAGTCAGTTTTGTGTACGTAGTACCTCTCAAAAATATCCTGAAACTATTGATTGCAGTGTTGTACCATCAACATCTGTTGTTAATGGTAGGGAGTGGGACCCCTTAGCAACTTCAAAGTTAAATGGTGAGGAGAAAAACTTGACACAAGATGCAGATGACTTGCCATCAATGATCCCATATCATGAGCAAAGTGGGGAAAATATTCCACAAAAGGTTGAACGACCTGCTTCACAAGGAAAATCCGTGGGTGGGGAAGATATTCCACAAAAGGTTGAACAACCCACTTTGCAGGGAAAATCCATTGGAGAATTTGTTGATGGTAAATCATTTCCTTCATCCCCTGAAATACATGCACGTCAGCCCCCCCCAAATGAGGTGCAGCATCCATCACCAGTTGTTGAGAAGGCTATGGAATTGGATGTAGCTAATACACAAGTGACTGAGAATCAGTTGCCACCCAttaacaaagaagaaatttccAGAACTAAGGTGGGATTCTTTAAAAGGACATGGAGAAAGTTGACGGGCAATGAAATTTTTGGCTCTGAGAATGTGACTCCAAATATTCTAGGAAAAGATAGTAGATCAGGTGATTACTCTGCTGAGCAAAGTAATGGAATGATCGAAAAGAATGGTTTTTCTGTCGATAGAACTATCAAGTCTGAAGCTGAAGacaaatatgagaaaccaactAAAAAGGAGGCAGATGCAGGATGTCAGATTCCTGGTTCTTCACCAATTGATGAATCTGTGGTCAAGAGAAAAGCTAGTGAAAGTTCTGAAATTCATAGTGATAATTCTATAGAAACTCGtggtttcttttgttggaTTGGAAGTTGGTGGCCATTTTGGAAGCAGGGTAGAAAGAGTGATGAATTGAATACTAATCAGATCAAAATGATTGATCATTCTGAAGAGCCTGAATCACCGAAACTGGACCAGGCAGTTAGTCATATTAAAAAGCCTGAGTTATTTTCTAGTAGTTCCTTTTGGAGTGACGtgaaatcttttctttttacatccAAAGGATCAGTTCTTGTCTCCCAGTCGAAAAGCAGGGAGGACATGGCACGTAACTTACAGAAAAATGGACCCCTATCACTTGGTTCTCTCAGTGAAAATAATCTCCTTCAACTGGTGGATTTGTtaatatcagaaaaaaaatggttggAAGAATGTCCCTCTCAAACTTTACCTTTCAAATTGGCTCAACCAGTTGGAAGGAGCTCAATGTTAGGTCAATCTCATGGTGCAAATGGCTTGAGATCTATCTTTCTAAGCAGTACATCGCAGGCCAACTCGCAAAAATTATCAGATGTGGAGAAACGAAGTCAGACTATTCCCCACACGGGAGTTCTTCCAAGTGCCAATAAAAGGAAGCATACTGAAAGGTCTAGGGGTGACGTATTAGCAGATTGTCAGAAACTtgtaaatgaaatattaaggAAACATCCAGAGGGATTTAATATGGGCACTTTTCGGAAGCTTTTCCTTCAGAGGTATGGCTATTCCCTTGATATTCACAAGCTTGGTCATCAAAAGTTGGTATCCTTATTACAGACTATGCCTGGAGTGAAAATAGAGTCCACGTATATCATTCCTGCTGATCATGCCGTATGTGATTTTGTCCGGGAAACTCCTGTAGACAATACTTGGGGAACTAATGCTTCCCTTACAGGGTCCAATTCAGATAGCGAGTTGTCAGATTCGGCCAAAAAAGATGATAACATTGACTCCGCATGGGAAGAATTAGGTCCCGTTTCCGTCAACATTGATGTGGAATCAAAGTTAAACATGAAAACTCTAGAACTGAAGACGGCAAAGGCTCCTGATTATGAGCCTTGTCTCTCTGATGATGATTTATCTGAATCTGAAGGAGATAATTCTTATTTTGCCCAATCAGAAAGACACGAGAAGCCAAAAACTGATGAGAAAGAAAGTAGTTTATTGCATATTCTGGATTCATGGTACAGCAATAAGGAAGGAGACGATAAAGCAAAGAAATTGGACAATGTTAAGTCCACATGTGATGATCTGACAGATATTTTAAATCCATCCAGTCCAGGAACTTCTGCAGGGACTATCAAGCAAAAGCGCAAACTTCAAAAGAGCTTTTCATTTGTTACTGATACAGACTTACATGGGAAGGACGGTCTAGTCATTGATGGCTCCAAGAGATCAAATGAGTTGAAGATAcaaaatta 3170 0.3968 MRPLLPRNLFLFLPHSSSLARAFLLQISHFSGSSNSPSHFPSYSRRQDEESRNVRVAVWWDFENCHLPAGVNVFRIAHAITEAVRANGIKGPIQITAFGDVLQLSRANQEAMSSTGINLTHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMSNYNILLASPERAPNVLCSAATIMWHWSSLVKGENLAGKRYNYPPDGPYGSWYGHHKVPLEDPFLASEQSTSSQSEEISETTTDTKLRPVPKAIVKRIQNILNSYPKGLSLSDLRAELAKTDVILDKDYYGHKKFSRLLLSMPQIVQIRVGPDSQFCVRSTSQKYPETIDCSVVPSTSVVNGREWDPLATSKLNGEEKNLTQDADDLPSMIPYHEQSGENIPQKVERPASQGKSVGGEDIPQKVEQPTLQGKSIGEFVDGKSFPSSPEIHARQPPPNEVQHPSPVVEKAMELDVANTQVTENQLPPINKEEISRTKVGFFKRTWRKLTGNEIFGSENVTPNILGKDSRSGDYSAEQSNGMIEKNGFSVDRTIKSEAEDKYEKPTKKEADAGCQIPGSSPIDESVVKRKASESSEIHSDNSIETRGFFCWIGSWWPFWKQGRKSDELNTNQIKMIDHSEEPESPKLDQAVSHIKKPELFSSSSFWSDVKSFLFTSKGSVLVSQSKSREDMARNLQKNGPLSLGSLSENNLLQLVDLLISEKKWLEECPSQTLPFKLAQPVGRSSMLGQSHGANGLRSIFLSSTSQANSQKLSDVEKRSQTIPHTGVLPSANKRKHTERSRGDVLADCQKLVNEILRKHPEGFNMGTFRKLFLQRYGYSLDIHKLGHQKLVSLLQTMPGVKIESTYIIPADHAVCDFVRETPVDNTWGTNASLTGSNSDSELSDSAKKDDNIDSAWEELGPVSVNIDVESKLNMKTLELKTAKAPDYEPCLSDDDLSESEGDNSYFAQSERHEKPKTDEKESSLLHILDSWYSNKEGDDKAKKLDNVKSTCDDLTDILNPSSPGTSAGTIKQKRKLQKSFSFVTDTDLHGKDGLVIDGSKRSNELKIQN 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01598 1056 PANTHER EMB|CAB71880.1 15 1002 - -
Bva05g01598 1056 Pfam OST-HTH/LOTUS domain 261 325 IPR025605 -
Bva05g01598 1056 Pfam OST-HTH/LOTUS domain 792 851 IPR025605 -
Bva05g01598 1056 Pfam OST-HTH Associated domain 673 714 IPR025677 -
Bva05g01598 1056 Pfam NYN domain 55 190 IPR021139 GO:0004540
Bva05g01598 1056 MobiDBLite consensus disorder prediction 873 895 - -
Bva05g01598 1056 CDD LOTUS 792 849 - -
Bva05g01598 1056 ProSiteProfiles OST-type HTH domain profile. 259 331 IPR025605 -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 546 575 - -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 873 888 - -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 385 450 - -
Bva05g01598 1056 CDD PIN_limkain_b1_N_like 55 179 - -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 757 774 - -
Bva05g01598 1056 CDD LOTUS 260 318 - -
Bva05g01598 1056 ProSiteProfiles OST-type HTH domain profile. 791 867 IPR025605 -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 757 787 - -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 935 968 - -
Bva05g01598 1056 Gene3D - 260 334 IPR041966 -
Bva05g01598 1056 MobiDBLite consensus disorder prediction 952 968 - -
Bva05g01598 1056 PANTHER LIMKAIN B LKAP 15 1002 IPR024768 GO:0005777|GO:0010468|GO:1903231
Bva05g01598 1056 Gene3D - 46 197 - -
Bva05g01598 1056 Gene3D - 786 854 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01598 Bva-Chr5 13006917 13011312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01598 54 202 C2H2 Transcription Factor Family AT5G61190 45.638 2.52e-38 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01598 - - qsu:112027506 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01598 05 13006917 13011312 Bva05g01598 05 13006917 13011312 ECH