Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01585 atgTATGCTTCTAGTTCTACTCCCTCTGTTGCACAGCTCTTCCAGGATCTTCTTGGGGACTTCCACTCAAGGAGATTACTCTTTCACACCTCACTTAACCAGTCACCCGACTCAGCCAATCCCCCAGCTTCCACAAACAACCCCAACTCCACAGAGTCATATCTAGGTGATGGCAATTTTGATGCAAATGTTGTTATGGTACTCTCGGTTCTACTCTGTGCTCTAATTTGCTCACTGGGTTTGAACTCCATCATAAGGTGTGCATTAAGATGTTCCAATTTTGTGGCAAATGAATCTGGGACTGGGAGTGATCCTCCTGCTCGATTGGCCAACACAGGAATCAAGAAAAAGGCTCTCAAGACTTTTCCCACATTAAGCTACTTGCCTGAGTTGAAACTTCCGGGCTTAGACACAGAGTGTGTCATATGCCTATCAGACTTCACCAATGGTGATCGTGTGCGCATTTTGCCAAAGTGCAACCATGGTTTCCATGTCCGCTGCATTGACAAATGGCTAAATTCACATTCTTCTTGCCCTAAATGCAGACAGTGCCTAATTGAGACCTGCCAAAAGATTGTTGGCTGCGGCCAGGCTACCTCAACTCAACCACCTGCGCAGCCAGTACCAGTACCAGAAACCATTGTAAGGATTGTGCCACTAGAACCCGAAGCTCGGGTTTCCAATTACAGGGAAGTTAGCTA 701 0.465 MYASSSTPSVAQLFQDLLGDFHSRRLLFHTSLNQSPDSANPPASTNNPNSTESYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVANESGTGSDPPARLANTGIKKKALKTFPTLSYLPELKLPGLDTECVICLSDFTNGDRVRILPKCNHGFHVRCIDKWLNSHSSCPKCRQCLIETCQKIVGCGQATSTQPPAQPVPVPETIVRIVPLEPEARVSNYREVS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01585 233 CDD RING-H2_EL5_like 139 182 - -
Bva05g01585 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Bva05g01585 233 SUPERFAMILY RING/U-box 118 187 - -
Bva05g01585 233 PANTHER RING-H2 FINGER PROTEIN ATL78 6 231 IPR044602 GO:0016567|GO:0016740
Bva05g01585 233 SMART ring_2 140 181 IPR001841 -
Bva05g01585 233 PANTHER RING-H2 FINGER PROTEIN ATL78 6 231 - -
Bva05g01585 233 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Bva05g01585 233 MobiDBLite consensus disorder prediction 32 52 - -
Bva05g01585 233 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01585 Bva-Chr5 12962925 12964021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01585 39 186 C3H Transcription Factor Family AT3G10910 48.408 2.06e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01585 K19040 - vvi:100243666 315.849