Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01580 ATGGGCAGAGACGATCTATACATCGCTGTTCCAAGCTTCTTTAGGTGTCCCATATCGCTTGACGTCATGAAATCTCCTGTCAGTCTCTGCACCGGAGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCCACAACACCTGCCCCTCTACCATGCAGGTACTTCAAACCAAGGAATTCGTTCCCAACCGTACTCTACAGAGACTAATTCAGATCTGGACCGACTCGGTCCGCCAGCGAGTCGAATCGACCGAGTCCCCGCCTTCCAAATCTGTCCCTTCCCAACAACAAGTCCTATATGCTATCAGAGATTTGCAGAATCAGACTCAGAGCCAGAACCAGAACCAGAACCAGAACCAGAATCGATTGGATTCGTTATCAAAATTTCTATGTTTCGCCAAAGAATCCAAGGAGAACAGACAAATTCTAGGCAATATGGACGGCCTTGTTCCTATGCTGATTGGTTTCCTGGACATTGGAGATGATGCTGTTAGTGGGAGCGTTGAATTTCTCGAGAAAGTTGTTGAGGTTTTGGATTTGGTTTTAAACGATAAAAGCCAAGAGCAGCGCGAGAAATTGGCAAAGCTGATATTGAAGAGGCAGAGCAATTGCTTATCTTCTTTGGTTCTCGTTCTACGACAAGGCAGCAGCTCCGAATCTAGAATTGGATCGGCTAAGCTATTGGAAATGACGGCAGTGGACGCGGAGGCGAAGGTATTGATTGCTGAAAAGGAGGCGGTAATACCGGAATTGCTCAAATTAATCACATTGACGCCAGAGAAAGACGGAGGCGTAATCGAGAACGGGTTGTCGTGTTTGGTGGCAATCTCGATGCCAAAACGGAACAAGATGAAATTGGTCGAATTCGGAGTTGTACGGACACTGTCTAAATTGATTTCGGAGACGAACCGGAGCGTTGGGGTAATAGAAAAAGTGCTGAAACTGTTGGAAACGGTGTCGTCGAGCAAAGAAGGGCGAGCAGAGATCTGCGAGGACGAACGGTGCGTGGCGGGGATAATGAACAAGGTTCTGAAAGTATCGAGTGTGGCGACGGAGCACGCGGTGACGATACTGTGGAGTGTTTGCTATCTGTTTCGCGACCAGAAGGCGCAGGAAGCGGTGAGCAAGGCGAACGGATTAACGAAGATTCTACTTCTTATGCAGAGCAATTGTTCAGCAGCTGTTCGACAAATGTCTGCTGATTTGCTTAAGATTTTTCGCGTAAACTCAAAATCATGTCTTCTTTCCTATGACACTAACACCACGCACATCATGCCTTTCTG 1292 0.4776 MGRDDLYIAVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGHNTCPSTMQVLQTKEFVPNRTLQRLIQIWTDSVRQRVESTESPPSKSVPSQQQVLYAIRDLQNQTQSQNQNQNQNQNRLDSLSKFLCFAKESKENRQILGNMDGLVPMLIGFLDIGDDAVSGSVEFLEKVVEVLDLVLNDKSQEQREKLAKLILKRQSNCLSSLVLVLRQGSSSESRIGSAKLLEMTAVDAEAKVLIAEKEAVIPELLKLITLTPEKDGGVIENGLSCLVAISMPKRNKMKLVEFGVVRTLSKLISETNRSVGVIEKVLKLLETVSSSKEGRAEICEDERCVAGIMNKVLKVSSVATEHAVTILWSVCYLFRDQKAQEAVSKANGLTKILLLMQSNCSAAVRQMSADLLKIFRVNSKSCLLSYDTNTTHIMPF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01580 430 Gene3D - 96 419 IPR011989 -
Bva05g01580 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 94 IPR013083 -
Bva05g01580 430 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Bva05g01580 430 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 430 - -
Bva05g01580 430 SUPERFAMILY ARM repeat 121 410 IPR016024 -
Bva05g01580 430 PANTHER WDSAM1 PROTEIN 4 430 IPR045185 GO:0061630
Bva05g01580 430 SUPERFAMILY RING/U-box 4 79 - -
Bva05g01580 430 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Bva05g01580 430 CDD RING-Ubox_PUB 14 56 IPR045210 -
Bva05g01580 430 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01580 Bva-Chr5 12928710 12930148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01580 1 430 U-box Gene Family AT5G64660 49.657 3.46e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01580 - - cam:101496984 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01580 05 12928710 12930148 Bva05g01580 05 12928710 12930148 ECH