Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01575 ATGGCTCCTGCCGCCTCGGCGGCGGCGGTGGCGGCTCAGAGGCTCATCGGCGTCAGTCGCCTCGCACATGCCCCGCGCCGCCCATCGCCGGCGTCCTCTCATCCGCCAAAGAAGTTTAAGTCTTTAACCGAGATAATGGCGAAAGCTCGCTTTGCTGTAATTGAACGGGAGGATTACAGCGACGCAGTCTGTGACCAATGTGGGTCCGGTGAACAACAAGACGAGCTGCTTCTATGTGACAAATGCGACAAAGGCTTTCATATGAAATGCCTGAGACCCATTGTGGTCAGAATACCGATTGGATCATGGCTTTGCCCTAATTGTTCGGGAGAGAGAAGAGTAAGAAgtttCTCCCAGAAGaagattattgattttttccAGATTCAGAAGGGTGCTGATGCTAAAAACAAATGCTCATATTCTCAAGATGTCAAGAAGCGTCGAAGACGTTCAGCATCATTGGTATTgcagaagaaaaggagaagactGTTGCCGTATATTCCAACAGAAGATGCTGCACAAAGAATGAAACAGATGCGTTCTCTTGCCTCTGGTTTAACAGCATTGAATATGGAGTTCAGTAATGATCTCACATACTCACCTACGATGGCTCCTAGAGCTGCTAATCAAGCAAAGTTTGAAAATGGTGGCATGCAGgTTCTTTCTAAGGAAGATAATGAAACCTTGGAATACTGCAGAGCCATGTGTAGAAGAGGCGAATGCCCTCCCCTTTTAGTTGTTTTTGATTCATGTGAAGGCTACACCGTAGAGGCAGACGGCCCCATAAAGGATATGACACTTCTCGCTGAGTACGTTGGAGATGTGGATTACCTCAAGAACCGAGAAAACGATGATTGTGACAGTTTGATGACCCTTCTTCTTTCAACAGATCCTCCCAAAAGTCTTGTTATCTGCCCTGATAAGCGTGGTAACATTGCCCGCTTTATTAATGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAACAGAACTGTAAATGCGTGAGATACAGTGTTAACGGCGAATGCAGGGTATTCTTGGTTGCAACTCGTGATATTTCCAAGGGGGAGAGACTGTATTACGATTACAACGGATATGAGCATGAATACCCTACTCACCATTTTGTCTA 1130 0.4487 MAPAASAAAVAAQRLIGVSRLAHAPRRPSPASSHPPKKFKSLTEIMAKARFAVIEREDYSDAVCDQCGSGEQQDELLLCDKCDKGFHMKCLRPIVVRIPIGSWLCPNCSGERRVRSFSQKKIIDFFQIQKGADAKNKCSYSQDVKKRRRRSASLVLQKKRRRLLPYIPTEDAAQRMKQMRSLASGLTALNMEFSNDLTYSPTMAPRAANQAKFENGGMQVLSKEDNETLEYCRAMCRRGECPPLLVVFDSCEGYTVEADGPIKDMTLLAEYVGDVDYLKNRENDDCDSLMTLLLSTDPPKSLVICPDKRGNIARFINGINNHTPEGRKKQNCKCVRYSVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01575 376 SMART set_7 242 370 IPR001214 GO:0005515
Bva05g01575 376 Pfam SET domain 258 364 IPR001214 GO:0005515
Bva05g01575 376 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Bva05g01575 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Bva05g01575 376 SUPERFAMILY SET domain 176 364 IPR046341 -
Bva05g01575 376 SMART PHD_3 63 109 IPR001965 -
Bva05g01575 376 Pfam PHD-finger 63 109 IPR019787 -
Bva05g01575 376 ProSiteProfiles SET domain profile. 242 364 IPR001214 GO:0005515
Bva05g01575 376 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 17 374 - -
Bva05g01575 376 CDD SET_ATXR5_6-like 239 376 - -
Bva05g01575 376 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Bva05g01575 376 SUPERFAMILY FYVE/PHD zinc finger 28 109 IPR011011 -
Bva05g01575 376 Gene3D SET domain 113 376 IPR046341 -
Bva05g01575 376 PANTHER HISTONE ACETYLTRANSFERASE 17 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01575 Bva-Chr5 12907932 12908360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01575 59 114 C2H2 Transcription Factor Family AT3G01460 42.857 1.94e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva05g01575 SET 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01575 K24406 - pvy:116122859 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01575 05 12907932 12908360 Bva05g01575 05 12907932 12908360 ECH