Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01572 ATGTCAATGTCTTCCCTCCTCTGCCTTCCCATTCTttccctctttctcttcctctctatCTCCTCCGCCACCGCTCAACCGGAGGTAATCCAACAAGCCTGCAAAGCCACCCGCTTCCCCCACCAATGCCAAACTTCTCTGACTCGCGTCCCTCCCGACCCGACTCCCTTCCAACTCGTCCAATCGGCCATGGGGGTCACCTTGGACAACCTCAAGACCGCTCAGTCAATGGTCGCGGCCATTTTAAACGCCTCGGCAGACAACCGCAACCGCACCGTTGCCGCAAAGACATGCCTCGAAATGCTCCATTATTCGGAGTACCGCATTTCTCTCACCAATGACGCGCTGTCACGTGGCAAGAATAAGCACGCCCGAGCTTGGATGAGCGCTGCCTTGGCGTATCAGTACGACTGCTGGTCCGGGCTGAAGTACGTCAACGACACCCGCATGGTGGAGGAAACCATGGTCTTCTTGAACTCGCTCACTGGCCATTCCAGTAACGCCCTCAGCATCATCAGGTCCTACGATGTATTCGGGAACGATACTGCGGCGTGGAAACCGCCCATGACAGAGCGCGACGGGTTCTGGGAGAGTTCCGGGTCGATAAACGGGTCTTTCGACGGTGGGTTTCCAACCGATTTGACGGCGAATGCCACGGTCTGTAAGGACGGGGGCAATGGCTGTTATAGGACGGTGCAGGAAGCCGTGAACGCCGCGCCCGATAACCCAGGGGCACGGAGGTTTGTGATACACATAAAGGAAGGAGTCTATGAGGAGACGGTTCGGATCCcgttggaaaagaaaaatgtagtGTTTTTGGGTGATGGCATGGGTAAGACGGTCATCACAGGCTCCGCCAATGTGGGCCAACCCGGAATGACAACATACAAATCAGCTACAGTCGGGGTTCTTGGAGATGGGTTCATGGCCAAAGATCTGACAGTAGAGAACACGGCAGGCCCTGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATATGTCCCTGATTGAGAACTGTGAATTCTTAGGCCACCAAGACACCCTTTACGTTCATTCTCTCCGGCAATTCTACAAATCATGCCGCATCCAAGGCAACGtagatttcatttttggcaACTCAGCTTCCGTTTTCCAAGACTGCCAGCTCTTAGTAACTCCCAGGCAATTGAATCCTGAAGCCGGAGAGAACAATGCCATCACAGCACACGGCAGAACAGATCCTGGCCAGAAAACAGGCTTTGTTTTCCACAACTGTTTGATTAATGGCACTGAAGAATACATGAAGTTGTATCACGGCAAGCCTCAAGCACACAAGAATTTCCTGGGGAGGCCATGGAAGGAGTTTTCCAGAACGGTTTTCATTAACTCTTCATTGGAAGCTCTTATTACACCAGATGGTTGGATGCCATGGATGGGTGACTTCGCGCTGAAGACACTCTACTTTGGCGAGTTTGAGAATTCAGGAACAGGTTCTAATATGACAGAGAGAGTTCCCTGGAGTAGCAAGATCCCAGCCGAGCATGTTGTCACGTATTCAGTCCAGAATTTCATTCAAGGAGATGAGTGGATTCAGTA 1580 0.5051 MSMSSLLCLPILSLFLFLSISSATAQPEVIQQACKATRFPHQCQTSLTRVPPDPTPFQLVQSAMGVTLDNLKTAQSMVAAILNASADNRNRTVAAKTCLEMLHYSEYRISLTNDALSRGKNKHARAWMSAALAYQYDCWSGLKYVNDTRMVEETMVFLNSLTGHSSNALSIIRSYDVFGNDTAAWKPPMTERDGFWESSGSINGSFDGGFPTDLTANATVCKDGGNGCYRTVQEAVNAAPDNPGARRFVIHIKEGVYEETVRIPLEKKNVVFLGDGMGKTVITGSANVGQPGMTTYKSATVGVLGDGFMAKDLTVENTAGPDAHQAVAFRSDSDMSLIENCEFLGHQDTLYVHSLRQFYKSCRIQGNVDFIFGNSASVFQDCQLLVTPRQLNPEAGENNAITAHGRTDPGQKTGFVFHNCLINGTEEYMKLYHGKPQAHKNFLGRPWKEFSRTVFINSSLEALITPDGWMPWMGDFALKTLYFGEFENSGTGSNMTERVPWSSKIPAEHVVTYSVQNFIQGDEWIQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01572 526 CDD PMEI-like_3 33 172 - -
Bva05g01572 526 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 13 525 - -
Bva05g01572 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 174 IPR006501 GO:0004857
Bva05g01572 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 173 IPR035513 -
Bva05g01572 526 SUPERFAMILY Pectin lyase-like 216 526 IPR011050 -
Bva05g01572 526 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857
Bva05g01572 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Bva05g01572 526 PANTHER PECTINESTERASE 13 525 - -
Bva05g01572 526 SMART PMEI_2 25 171 IPR006501 GO:0004857
Bva05g01572 526 Pfam Pectinesterase 217 522 IPR000070 GO:0030599|GO:0042545
Bva05g01572 526 Gene3D - 211 526 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01572 Bva-Chr5 12892222 12893945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01572 21 524 Carbohydrate Esterase AT5G09760 66.797 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01572 - - gmx:100801231 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01572 05 12892222 12893945 Bva05g01572 05 12892222 12893945 ECH