Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01571 ATGAGTGGAAGTGGTAGAAAGCGCTCCTCAAAATGGGATTTGAAAGATGAACATGAATTTGCATCTGATAGTAAGCAGTTGCGATCTGGGTGGCACTCTGCAGATGTTGCTGGCAGAGGTTTAAGTaaggaaaatattacaaataaagaCTACAATCGAGTTTTGGACAGCTCAGTGGCCTGGGATGCAGATGGAGATTACAGCACAAAAATGTCTCCTGGTTTTGAGGATTGGAAATACAAGAGGCACAGTCAATCCCCCAAAGATGGTTGGGGCAGGTCAGTGAGGAGCAGGAGCCGGAGTAGGAGTAGGAGTAGGAGCAGGAGCCCTGCCCGTATCAGGTGGGATTCAGGATTTGAGGACAGAAATAGAACAAGACCTGGAGGGGAAACACAGCCTTGTCGAGACTTTGCTGCTGGGAAATGCAGAAGAGGTAGTCGTTGCCATTTTCTTCATGATGACCAAAGTTATGAGGATAACTGGGATAGTAGACACAGGAAAGATGGAGCTCCAAGATATTCTGCTCCCCATGAGAGTAGGGACTATTCACTTCGGAGTGGAAGATCTAATGAGACTTgtattagttttattaatgGCAGGTGTAGAATGGGAGCATCTTGCAAGTATGTGCATCATGGCAATGCTGATGAATCAgctagagaaagagaaattgataGAAGGCGCAGGGAGGGTTCTTTTGAGCGGGGTGTTGGACATGAGCCAAACCGCAGTTTGGATACACCCTGCAAATTTTTTGCTGCAGGAAACTGTCGTAATGGTAAATATTGCAGGTTTTCTCATGATAGGCAAGTGCGTAGGAGTCCAAGTAGAAGAGTAAGGGAAGAGAGGTGGGGTGGCAATCCAGGTGGAGATCAGGTGTTGGATAGGCCAAAATGGAGTGATTCAGTTAGTCCAAATGGACGGCTAAGAGATGAATCTGATAGATGGGGTTCAGATCGTAATATGGTTGATGCAGATAAGGCATGGGATAGTCCAAAGTGGAATGATACAGTTGCGGTCTCTGATGCAACAAACTTGAGGGAGAATAAAATTGGAAATATGAGTGCCCCAGAAAAATCGGGATTCACTTCTTGGCCTATCAGTGAAGGATGGGACCATAGTTTAGATAAGAGCAAATTACATGTGGAACCCACAATTGAGAGTGATAAGAAGGAAGGCAACCAGTGGAAGGCAGAAATTGCTGGTACCGACGCAGGTGTTCCCCAGTCAATAGGTACAGACAAAATGTCACCTGACTGGAATTATAGTATGGGATCTTCCAGCCATATTAAGGAAGAGCATGGACAGAATAAGCTGGGGTTATCCCAGGATGGTACATTATTAGCCACCTCTGAACGTGATAGAATACCAGCTGCTCCAGGACAAGGCTTCCACCAGAGTGCACAGAGTATAAATGCATTGCACCCTTTGAGTTGCCACGTCGTTGGACAAAGTCAAGTGGCAGTCCCCATTATCCCTCCCAGAGGAGGAAATGTTGACGGTCCACAGAACCAAGACGTATCTGCTGAGAATAAGTACAGTGCTCAACCAAATATCATTGATGCAAGCTCATTGGAAGTTGGTTCCAGAAATCCTTCAACTCAGAACTTGGTAAGCAATGAACAGCTTACCCAACTTACCAGTCTCTCAGCCTCTCTGGCTCATTTTCTTGGGACAGGTCAGCAGCTCCCACAGCTTTATACGGCTTTAAATTCTCATGATGCAAAGGACAGTCCCTCCTTCGCCAAAACTGAAGGATCTATGGAGCCTGTTTCTGCAACATTCAACAAGCCAGATCCTGTTGTTGGATTCCAGAAGCAATATGATCCAATGAGTGATAGTATTGAGCCAAAGAAGGTCAATGCTGGCGGTATTCCACTGTCTTTCACtccaagtaaaaaaattgcagaagGTGAAATAGAAACTCTGCCACTGTTGTCTAACTCTGGGACACACAACTCGGGTGAGGGTAGTAAGACTGCTGCCTCGGAAAAACAACAGATCGTCAACAATGAACAGCTAATTCAATTGCAGCCAGGTGGAAACATTGAGATTACTAAACCGAACAACGAAAGGATGGTTGAGGAAAAGCAAAAATCTCGAGAAGATTGTGGAAATACAAAAGAGAATGATCCGTTGGAAAACACTGACCAAAATGGTGGACCTGATGAGTccaagaaaacaaaggaaaaggatGTGAAGGGGGTTCGTGCTTTTAAATTTGCACTGGTGGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAGGATGGTCAAATATCGAAAGAACATTACAAAACAATTGTGAAGAAAGTGGTTGACAAAGTAACCGGTACTATGCAGGGGGCTCATATTCCCCAGACACAAGAGAAAATTGACCactatttatcattttcaaaaccAAAGCTTACCAAACTTGTACAGGTCAGTGGTGGTTCACTTAAGTTATTCCATTCTTTATCTAAAGGTTTTCTGAGCCTCATCACTTA 2489 0.4283 MSGSGRKRSSKWDLKDEHEFASDSKQLRSGWHSADVAGRGLSKENITNKDYNRVLDSSVAWDADGDYSTKMSPGFEDWKYKRHSQSPKDGWGRSVRSRSRSRSRSRSRSPARIRWDSGFEDRNRTRPGGETQPCRDFAAGKCRRGSRCHFLHDDQSYEDNWDSRHRKDGAPRYSAPHESRDYSLRSGRSNETCISFINGRCRMGASCKYVHHGNADESAREREIDRRRREGSFERGVGHEPNRSLDTPCKFFAAGNCRNGKYCRFSHDRQVRRSPSRRVREERWGGNPGGDQVLDRPKWSDSVSPNGRLRDESDRWGSDRNMVDADKAWDSPKWNDTVAVSDATNLRENKIGNMSAPEKSGFTSWPISEGWDHSLDKSKLHVEPTIESDKKEGNQWKAEIAGTDAGVPQSIGTDKMSPDWNYSMGSSSHIKEEHGQNKLGLSQDGTLLATSERDRIPAAPGQGFHQSAQSINALHPLSCHVVGQSQVAVPIIPPRGGNVDGPQNQDVSAENKYSAQPNIIDASSLEVGSRNPSTQNLVSNEQLTQLTSLSASLAHFLGTGQQLPQLYTALNSHDAKDSPSFAKTEGSMEPVSATFNKPDPVVGFQKQYDPMSDSIEPKKVNAGGIPLSFTPSKKIAEGEIETLPLLSNSGTHNSGEGSKTAASEKQQIVNNEQLIQLQPGGNIEITKPNNERMVEEKQKSREDCGNTKENDPLENTDQNGGPDESKKTKEKDVKGVRAFKFALVEFVKELLKPTWKDGQISKEHYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLTKLVQVSGGSLKLFHSLSKGFLSLIT 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01571 829 Pfam RNA-binding, Nab2-type zinc finger 193 211 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 159 184 - -
Bva05g01571 829 Gene3D - 124 230 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 578 630 - -
Bva05g01571 829 ProSiteProfiles Zinc finger C3H1-type profile. 248 270 IPR000571 GO:0046872
Bva05g01571 829 MobiDBLite consensus disorder prediction 268 317 - -
Bva05g01571 829 SMART c3hfinal6 188 213 IPR000571 GO:0046872
Bva05g01571 829 SMART c3hfinal6 243 269 IPR000571 GO:0046872
Bva05g01571 829 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Bva05g01571 829 MobiDBLite consensus disorder prediction 215 241 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 1 46 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 644 731 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 8 25 - -
Bva05g01571 829 SUPERFAMILY CCCH zinc finger 246 268 IPR036855 GO:0046872
Bva05g01571 829 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 808 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 644 685 - -
Bva05g01571 829 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Bva05g01571 829 MobiDBLite consensus disorder prediction 62 136 - -
Bva05g01571 829 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Bva05g01571 829 SUPERFAMILY CCCH zinc finger 130 157 IPR036855 GO:0046872
Bva05g01571 829 Pfam CCCH-type zinc finger 248 268 IPR041367 -
Bva05g01571 829 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 153 IPR000571 GO:0046872
Bva05g01571 829 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 808 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 75 96 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 268 285 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 109 129 - -
Bva05g01571 829 MobiDBLite consensus disorder prediction 689 710 - -
Bva05g01571 829 Gene3D - 239 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01571 Bva-Chr5 12882793 12890436 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g01571 zf-CCCH 1.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01571 - K22909 gmx:100783856 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01571 05 12882793 12890436 Bva05g01571 05 12882793 12890436 ECH