Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01570 ATGGATAGCAATCAGAATACtacattctcaaattttaacaacACTGGTTGGAATCATGAGAAGATGAGATCGGAGACTGATCAAAATGTTGTTCATGAACAAATAATTCCTATGGGTTTTCTTTGGGGGCCaaactttccttttcaaatGCAACAAATACCATCGTCGTCGTCTCCGTCATCATCCTCGTCCAGCCTCTTACCTAGCACTTGTTCGGGTTTCCTTGATGATATGTTAGGGATCCAGTCAAAAGAAGATCAAGAAGGAggggaagaagaggaagaggaagcaGAAGAAGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAGCCGGTGGACATCGACCCAGCCACCATTCGAAAACCAAAGAGGAGGAACGTTAGAATCAGCGACGACCCACAAAGCGTGGCTGCACGTCACAGGCGAGAAAGGATCAGTGAGAAAATCCGTATCCTCCAGAGACTTGTCCCTGgagggaccaaaatggacactGCTTCTATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAGTCAGGTTGCTGCAATCATCACCTCACCCTCAACACCCACCACACCCACACCCACACCCACAATGCATTCCTGCAGCCTTGGGCCTTATTACCAACACTAATAATGTTGCTGCTCCCACTCATCATTGGCCTTTTGCACCAAATCTGCAACAGTACTACACTTCCACCACCGCCACGGCCACCACCTCCTCCTCCACCCCTATGTCCGTGGATACAGCGGCAGCGCTTGGATTCAACGGCGGAGGGGGAGGAGGCCCAGCTCATCATGCCTCCTCCTTTTA 839 0.4505 MQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQVRLLQSSPHPQHPPHPHPHPQCIPAALGLITNTNNVAAPTHHWPFAPNLQQYYTSTTATATTSSSTPMSVDTAAALGFNGGGGGGPAHHASSF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01570 166 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 136 IPR045843 GO:0003700|GO:0006355
Bva05g01570 166 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 136 - -
Bva05g01570 166 CDD bHLH_AtIND_like 22 79 - -
Bva05g01570 166 Gene3D - 24 84 IPR036638 GO:0046983
Bva05g01570 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 96 IPR036638 GO:0046983
Bva05g01570 166 SMART finulus 27 76 IPR011598 GO:0046983
Bva05g01570 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 70 IPR011598 GO:0046983
Bva05g01570 166 Pfam Helix-loop-helix DNA-binding domain 31 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01570 Bva-Chr5 12869702 12871384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01570 1 84 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.333 1.29e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g01570 HLH 6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01570 - - aprc:113856609 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01570 05 12869702 12871384 Bva05g01570 05 12869702 12871384 ECH