Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01546 ATGAAGGAAGCTCAAACGACGATTCCCCACTTATTCAGATGCCCTATCAGTctagatttgttccaagatcCAGTAACTTTATGCACGGGCCACACCTATGACAGGTCGAGCATAGAAAAGTGGCTGGCTGCTGGTAATCTCACGTGTCCTGTCACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAATCACACTCTACGCCATTTGATCGATCGGTGGCTTCAACTGGGTTCCCAATTTGACCCTGgttattctaattatttagCAGCACTGAAACAAAGCCTTGAATCAGAGGAGACTACTTTAGAGAACAAGCTTCAAGCACTTGAGAAAATCAGAGTCTTGTCTGATGAATATTGTTCCCTCAAGAGATCTTGTTTCTTCCAATTGGGCTTGTTACCGTTACTTTTGGAACTTGTTTTTGGAAGATTACAGCCTCCTCAACTCTCCAAACATGATATGCAGCAGTTTATAGAGGTAGCGCTTTGTTGCATTCTGAAATTACTGCATCTTGGCAGTTTGGAGCCTTTAAATATGCTTAAACAAGAATCAAAAATAGCAACATTCCTGCTAATATTTGAACAGGGAAATAGCATGGTCAGGACTAGTTTGTGTGATCTTATGGATTTAGCTGTGTCATCATCGGATCCAGAGACACACGAGTTGTGTTTTATGCTTGGAAATTGTCACAAACTGGTGAGCGAGATTGTTGTTCTTGTTGACCAAAATTTTAAGGCTGGAATTAAAGGAATATCAGCGTTATGCTCTTTGCAATCTAACAGagaaaatttagtaaaagCAGGAGCAATAGATGGAAtcataaaatacattatttctGGTTGTGAAAGAGAAAGACGGCGTGAGAAGATATTGATGGCTCCATTGGCAATGGCAATATTAGAGAAACTTGTGGTATTAGAGAATGGAAAAGaggcattaattaataacccAAATGGTATAAAAACTTTGGTAAAGATGGTTTTCAGGGTATCTGATCAAGAGTGCAGTGAGGGTGCTGTTGGGTCACTTGTGATTGTCTGTCGTGATTTTGGGCGTGCTAGAGAGGAAGCCATTGCTGCAGGAATTCTCACTCAGTTACTGTTGCTTCTGCAGAGCCGATGCGGTGacacaacaaaaacaaaggcaAGATTGCTGCTCCGCTTGCTAAGATCCAAGTTGGCTGATGCTCAGCGACCACAACGACAACCAAATTA 1217 0.3887 MKEAQTTIPHLFRCPISLDLFQDPVTLCTGHTYDRSSIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDRWLQLGSQFDPGYSNYLAALKQSLESEETTLENKLQALEKIRVLSDEYCSLKRSCFFQLGLLPLLLELVFGRLQPPQLSKHDMQQFIEVALCCILKLLHLGSLEPLNMLKQESKIATFLLIFEQGNSMVRTSLCDLMDLAVSSSDPETHELCFMLGNCHKLVSEIVVLVDQNFKAGIKGISALCSLQSNRENLVKAGAIDGIIKYIISGCERERRREKILMAPLAMAILEKLVVLENGKEALINNPNGIKTLVKMVFRVSDQECSEGAVGSLVIVCRDFGRAREEAIAAGILTQLLLLLQSRCGDTTKTKARLLLRLLRSKLADAQRPQRQPN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01546 405 SUPERFAMILY ARM repeat 87 380 IPR016024 -
Bva05g01546 405 PANTHER WDSAM1 PROTEIN 7 393 IPR045185 GO:0061630
Bva05g01546 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Bva05g01546 405 Coils Coil 89 113 - -
Bva05g01546 405 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Bva05g01546 405 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Bva05g01546 405 CDD RING-Ubox_PUB 12 54 IPR045210 -
Bva05g01546 405 PANTHER OS02G0542800 PROTEIN 7 393 - -
Bva05g01546 405 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Bva05g01546 405 Gene3D - 245 399 IPR011989 -
Bva05g01546 405 SUPERFAMILY RING/U-box 4 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01546 Bva-Chr5 12756027 12757830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01546 8 377 U-box Gene Family AT3G19380 29.337 6.88e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01546 - - gmx:100815247 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01546 05 12756027 12757830 Bva05g01546 05 12756027 12757830 ECH