Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01541 ATGGAAGATGAGAGCCATAGCAATTTGCCAAATGGGCTGAAAACAGAGAGCCCTGAGAGTCCATGCTTAAAGAACAACAACAGCCACAACAAAGAACAAGATCGCTTCCTTCCTATAGCAAATGTGGGTAGAATCATGAAAAAGGTGCTCCCTGGCAATGGCAAGATCTCAAAGGATGCAAAAGAGATTGTTCAAGAATGTGTATCAGAGTTCATCAGCTTTGTTACTGGGGAAGCATCAGACAAATGtcaaagagaaaagaggaagaCTATCAATGGAGATGATATCATATGGGCCATCACAACCTTAGGCTTTGAGGATTATGTGGAGCCACTTAAAACCTACCTTCAAAAATATAGAGAGATAGAAGGAGAGAAGCTTAATATTCCAAAGCAACAGCGTTCTGAACAAAGGCTAcaacatcaacatcaacaCCTTCAAgaccataataataataatatacccTTAAATACTGTATATTCTTCAACAAATCTCATTTCTCAGCCCCCCTATGTGCCTACTGATCAGCCATTTTCCTTACCATTTTCTCCAAATTCAATCCAGAAACAGTTACAGCCACAAGACCAGATCGACTCGGTGGGGCATTGGTA 611 0.3732 MEDESHSNLPNGLKTESPESPCLKNNNSHNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKEIVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKTYLQKYREIEGEKLNIPKQQRSEQRLQHQHQHLQDHNNNNIPLNTVYSSTNLISQPPYVPTDQPFSLPFSPNSIQKQLQPQDQIDSVGHW 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01541 203 SUPERFAMILY Histone-fold 33 144 IPR009072 GO:0046982
Bva05g01541 203 MobiDBLite consensus disorder prediction 1 35 - -
Bva05g01541 203 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva05g01541 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Bva05g01541 203 MobiDBLite consensus disorder prediction 10 27 - -
Bva05g01541 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 193 - -
Bva05g01541 203 Gene3D Histone, subunit A 23 155 IPR009072 GO:0046982
Bva05g01541 203 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Bva05g01541 203 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Bva05g01541 203 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Bva05g01541 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 193 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva05g01541 203 MobiDBLite consensus disorder prediction 171 203 - -
Bva05g01541 203 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01541 Bva-Chr5 12726884 12727495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01541 12 203 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.593 1.52e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva05g01541 CBFD_NFYB_HMF 2.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01541 K08065 - gmx:100778216 318.931