Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01539 ATGGCGGAGAAGAATAGCAAGAAACCAGTCAGCCTCAACGACAGCCATTATCGTTTCCTCCAAGATCTTTCTGCTCCTCCTAAATGCTCTTTGAATCCATCTGATACCGAAGAAAATCAATCGGAGGTCATGCTTGAAGGCCGACGGCGCCTGTGCAAAGCTTCGTTGAAGGACAACAATCGCGAAGAAGACGATAATATTCCTCAGTTTTCTGCAATTACTGACTTCGATTCTCCTATAGACAAAGATTCATCGGAAGGAGAAAAGCATATCAAGATGGATAGGCGGGGCCGACTCAGCAAAGTTTCACCGAGGCAAAACAGCGAAGAACAGCGAGATCATGTAGGCCAGTTTTCAGGACTGGCTGACTTTGATTCTTTCCCCAaagaggaaaagaagaccAAGGTAAAAGTGGAAGGGCGACGCCGCCTCTGTAAAGTTTCATATCCAGAAGATGGTAATACTGATAAAACGCCGGATTTTGACCAACCAGAGTTTAATGAACTTGTCGATTTTGATTCACCACCTCCACCAccaaaaaatcttattcaaattGAGGAGAATGGGGGTGGAAATGAAATTAGGGATATTTTAAATGAGTTGAGCTCAAAGTTTGAGTATCTGTCAATTGAGAGGAAGAGAGTACCAAAGTCAGTGCGGCTGGATGAAAACACTTCAGCTTTTgtaagaggaaaagaaactggTCAAAGTAAGGTAATTGATTATGCCAGTGCAGAGTCTTCAATTTTACCACTGGGAAAATCCAATGATAACACATGGGATACAACTGGTATTGAGAATGTAGAAGATGACTCGGATGACTCTATTCAAGTGTTGGATAATTTTGATGACAAGGAGGATTGTTCTATAACTTTGAGTGGCCCAAATTCTACATATAAGTTGCCAGGAAAAATTGCAAAGATGTTGTATCCACATCAGCGGGATGGATTGAGGTGGCTTTGGTCTTTGCTTTGTCAGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAAATTTGTGGCTTTCTAGCTGGGTTATtccattcaaatttaattagaagGGCATTGGTAGTGGCTCCAAAAACGTTATTGCCCCATTGGATCAAAGAATTATCAGCTGTTGGCCTCTCAGAGAAGACAAGAGAATTCTATGGAACATCAATAAAATCCAGAGAATATGAACTTAATTACATACTTCAGGATAAAGGAGTTCTTCTCACAACTTATGACATTGTCCGGAATAACTCTAAGTCCTTACGAGGGAACTATTATTTGATTGGTGAGGAAAGCGACGACAGTGCCATATGGGATTATATGATACTTGATGAAGGGCATCTTGTAAAAAACCCAAGCACGCAGAGAGCTAAAAGTTTGCTGGAAATACCAAGTGCCCATCGCATTATCATTAGTGGAACTCCATTGCAAAATAATCTCAAGGAGTTATGGGCCTTGTTCAATTTCTGTTGTCCTGAGTTGCTTGGTGACAAAAAATGgtttaaagaaaaatttgaatcaGCCATACTTCGtggaaatgacaaaaatgcttcacagagagagaagagtATTGGTTCTTCTGTTGCAAAGGAGCTAAGAGATCGTATCCAGCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAGCCAAGATGACAATAAAAGTACAGAAAAACTTTCTCAGAAACAAGAAATCATTGTGTGGCTTCGTCTGACCAGTGTTCAGCGTCATCTTTATGAAGCATTTCTAAAGAGTGAGATTGTACTCTCAGCATTTGATGGTTCACCACTAGCAGCACTTACGattttaaagaaaatatgtgaTCATCCCCTTCTGTTGACAAAGCGAGCAGCTGAGGATGTGTTGGAAGGGATGGAATCAATGCTAAAGCCAGAAGAGGTTAATGTTGCAGAAAAATTGGCTATGCACATAGCAGATGTTGCTGACAGAGATGAGTTTGCAGATGAACATGATGTATCCTGCAAGATATCTTTCATAATGTCACTGCTGGATAATCTGGTTCCAGAAGGGCATAATGTTCTTATCTTCTCTCAAACACGCAAGATGCTTAATCTTATTCAGGAATCACTAGCTGCCAAAGGTTTTACATTTTTGCGTATTGATGGTACAACGAAAGCCAGTGAAAGGATGAGGATTGTTAATgaTTTCCAAGAAGGTGTTGGAGCCCCTATATTCCTCTTGACATCTCAAGTTGGGGGTTTAGGGCTGACACTTACAAGAGCAGATCGTGTGATTGTGGTTGATCCAGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGATCGTGCATATCGTATTGGTCAGAAAAAAGATGTACTTGTGTACAGGCTAATGACATGTGGTACTGTTGAAGAAAAGATATACAGGAAGCAGGTATTTAAGGGCGGCTTATTTAGAAGTGCAACTGAGCATAAAGAGCAAATTCGGTACTTCAGCCAGCAGGATCTTAGAGAGCTTTTCAGCCTCCCAAAAGAGGGATTTGATGTATCTGTTACCCAGCGGCAGTTAGAGGAGGAACATGGTCGCCAACATACATTGGATGGCTCTTTTAAAGCGCACATTGATTTTCTAAATAGTCAAGGCATTGCTGGAGTTAGTCACCACAGTTTACTATTTTCAAAGGCAGCACCAGTTCAAGCTGAACCTGAGGATGAAATAACAAGGAATCAAGGGATTAAATATGTTGGAACTTCAGCATCTGCTTCATTTGAAGATATTCCTGACGGTGCTGAGCTAGCCTTTAATCCAAAGGATATCAAATTGAGCAAAAAGTGTTCTTCCCCTAGCAGTATTGGTGAACTGACTGAGTCAGAAATTAGGGATAAAATTAAACGGCTTTCCCAAACTCTCGCAAATAAGGCGATGATTTCAAGATTACCTGATTCGGGGGAGAAAATACAAAAGCGGATTGCTGAACTGAATTCGGAGCTTGACAAATTGAAGATGACAGAAAGAACAGTAGTTGATTTGGATGATGTAACTGGGGAATTTCAAAGAGTACTAAATGTATA 3044 0.3916 MAEKNSKKPVSLNDSHYRFLQDLSAPPKCSLNPSDTEENQSEVMLEGRRRLCKASLKDNNREEDDNIPQFSAITDFDSPIDKDSSEGEKHIKMDRRGRLSKVSPRQNSEEQRDHVGQFSGLADFDSFPKEEKKTKVKVEGRRRLCKVSYPEDGNTDKTPDFDQPEFNELVDFDSPPPPPKNLIQIEENGGGNEIRDILNELSSKFEYLSIERKRVPKSVRLDENTSAFVRGKETGQSKVIDYASAESSILPLGKSNDNTWDTTGIENVEDDSDDSIQVLDNFDDKEDCSITLSGPNSTYKLPGKIAKMLYPHQRDGLRWLWSLLCQGKGGILGDDMGLGKTMQICGFLAGLFHSNLIRRALVVAPKTLLPHWIKELSAVGLSEKTREFYGTSIKSREYELNYILQDKGVLLTTYDIVRNNSKSLRGNYYLIGEESDDSAIWDYMILDEGHLVKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKEKFESAILRGNDKNASQREKSIGSSVAKELRDRIQPYFLRRLKSEVFSQDDNKSTEKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMESMLKPEEVNVAEKLAMHIADVADRDEFADEHDVSCKISFIMSLLDNLVPEGHNVLIFSQTRKMLNLIQESLAAKGFTFLRIDGTTKASERMRIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVFKGGLFRSATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLEEEHGRQHTLDGSFKAHIDFLNSQGIAGVSHHSLLFSKAAPVQAEPEDEITRNQGIKYVGTSASASFEDIPDGAELAFNPKDIKLSKKCSSPSSIGELTESEIRDKIKRLSQTLANKAMISRLPDSGEKIQKRIAELNSELDKLKMTERTVVDLDDVTGEFQRVLNV 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01539 1014 Coils Coil 974 994 - -
Bva05g01539 1014 SMART ultradead3 304 507 IPR014001 -
Bva05g01539 1014 MobiDBLite consensus disorder prediction 41 65 - -
Bva05g01539 1014 PANTHER SNF2/RAD54 FAMILY MEMBER 286 891 - -
Bva05g01539 1014 Gene3D - 280 545 IPR038718 -
Bva05g01539 1014 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 496 IPR014001 -
Bva05g01539 1014 CDD SF2_C_SNF 660 789 - -
Bva05g01539 1014 MobiDBLite consensus disorder prediction 79 112 - -
Bva05g01539 1014 Pfam Helicase conserved C-terminal domain 666 778 IPR001650 -
Bva05g01539 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 837 IPR027417 -
Bva05g01539 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 546 IPR027417 -
Bva05g01539 1014 MobiDBLite consensus disorder prediction 23 123 - -
Bva05g01539 1014 Gene3D - 565 862 IPR027417 -
Bva05g01539 1014 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 669 828 IPR001650 -
Bva05g01539 1014 PANTHER OS04G0692700 PROTEIN 286 891 - -
Bva05g01539 1014 SMART helicmild6 695 778 IPR001650 -
Bva05g01539 1014 Pfam SNF2-related domain 326 616 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01539 Bva-Chr5 12708452 12717170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01539 309 832 RAD5 or RAD16-like Gene Family AT1G02670 24.156 1.90e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva05g01539 SNF2_N 7.7e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01539 K20093 - gmx:100779283 1383.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01539 05 12708452 12717170 Bva05g01539 05 12708452 12717170 ECH