Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01520 ATGGTTGAAGGGAACAAGGAGGTTTCAGATTCCAATGACGTCACTTCTGCATTTCATGCAGCAAAACGTGCGAGATTCAAAGATGACCTGCAAAAGTTCAAAGGCGTTGTGCCACAACAAAATGGCCATTGGGGTGCAAAAATATATGCAGAATACCACAGAATTTGGCTGGGAACGTTTAAATCTGAAAGAGAAGCTGCTATGGCTTATGATAGCGCCACCATCAAACTTCGAAGCAGGGAGAGCCGTAGAAACTTCCCATGGAATCATCAAACTGTTCAAGAACCTCATTTTCAAAGCCATTATAGCACAGAAGCAGTGCTTAGCATGATTAGAGATGGCAactatcaatcaaaatttgctACATTTGTTAAGAATAACAAAACTCAACATGGTGGTGGCATTGGAACTAGTTTTAAGCAAATAAGGGtgaatgaagatgaaaaactTACTAGCAACCAGCTTTTTCAAAAGGAATTAACACCGAGCGATGTGGGGAAGCTCAACAGGCTTGTCATCCCTAAAAAGTACGCTGTTAGGTACTTTCCTTATGATTGTGGTGCCGATGactataagaataataatgtgATGGAAAATAGTGGGGTTGGTgacattgaacttgtatttTATGACATGCTCAGGAAAGCATGGAAATTCCGGTATTGCTATTGGAGGAGCAGCCAGAGTTATGTCTTCACAAGAGGGTGGAACAGGTTTGTGAAGGATAAAAATTTGAGGGCTAAGGATACTATTGTATTTTATACCTGTAAGCCCTCAAATATGGGAATAGAGGGCCGGCTTTTCACTTTGATAGATGTAATCTATAATGGAGATGAGAGAAGGGATTGCTTTGGAgagatgaagagagatttgaaacaaaatttgggaaatgttttaagtttcaatgaagtagaagaagatgaagatcaTGACAAACAATGCGAGGATGGAAAGGAACTGAGTGCATTACAATCATCACGAGATGCGCAAAAAGGTTTGAGGCTCTTTGGTGTACATATTAACTA 1025 0.3561 MVEGNKEVSDSNDVTSAFHAAKRARFKDDLQKFKGVVPQQNGHWGAKIYAEYHRIWLGTFKSEREAAMAYDSATIKLRSRESRRNFPWNHQTVQEPHFQSHYSTEAVLSMIRDGNYQSKFATFVKNNKTQHGGGIGTSFKQIRVNEDEKLTSNQLFQKELTPSDVGKLNRLVIPKKYAVRYFPYDCGADDYKNNNVMENSGVGDIELVFYDMLRKAWKFRYCYWRSSQSYVFTRGWNRFVKDKNLRAKDTIVFYTCKPSNMGIEGRLFTLIDVIYNGDERRDCFGEMKRDLKQNLGNVLSFNEVEEDEDHDKQCEDGKELSALQSSRDAQKGLRLFGVHIN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01520 341 SMART rav1_2 32 93 IPR001471 GO:0003700|GO:0006355
Bva05g01520 341 ProSiteProfiles AP2/ERF domain profile. 32 87 IPR001471 GO:0003700|GO:0006355
Bva05g01520 341 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Bva05g01520 341 Pfam B3 DNA binding domain 156 255 IPR003340 GO:0003677
Bva05g01520 341 Gene3D AP2/ERF domain 31 88 IPR036955 GO:0003700|GO:0006355
Bva05g01520 341 ProSiteProfiles B3 DNA-binding domain profile. 156 277 IPR003340 GO:0003677
Bva05g01520 341 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 341 - -
Bva05g01520 341 SUPERFAMILY DNA-binding pseudobarrel domain 152 261 IPR015300 -
Bva05g01520 341 Gene3D - 150 272 IPR015300 -
Bva05g01520 341 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Bva05g01520 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 341 IPR044800 GO:0003700
Bva05g01520 341 CDD B3_DNA 155 254 IPR003340 GO:0003677
Bva05g01520 341 SMART B3_2 156 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01520 Bva-Chr5 9506275 9507300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01520 32 273 RAV Transcription Factor Family AT1G51120 58.462 1.47e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva05g01520 B3 2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01520 K09287 - qsu:111998385 378.637