Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01506 ATGCCCGGCAAGGAGCAAACTCTTCATATTAAAGGTAGCAGAAAAATGTCAGGAGAAGAAGCTGTTGTAGCACCTGCTGAGGCTTTAGCACATTTAGGACTCCATGAAGGTGCCAAGGTGATTGAAAAGCCTGCTGCACATCTCTTTGTGTTAGATGAGGAATGTGATCAACTAGATTATGTTAAATTGATCAAGGGACTTTGTGCTGATTACAATGTCAAGTTGATAACTGTGGCTAAAGCTAAAACTCTTGGTGAATGGGCTGGGCTTATTCCAGGCCCAATGAGTTGGCtgaaaggaaaattagaaGTACACGAGAAGGAACGTCTTGGGCTCAAGAATAGGATTGAAAAGAAAGCAGCCTATCTGCAAGAGCTGGAGGGGCAAGACGAGACATG 398 0.4271 MPGKEQTLHIKGSRKMSGEEAVVAPAEALAHLGLHEGAKVIEKPAAHLFVLDEECDQLDYVKLIKGLCADYNVKLITVAKAKTLGEWAGLIPGPMSWLKGKLEVHEKERLGLKNRIEKKAAYLQELEGQDET 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01506 132 PANTHER 40S RIBOSOMAL PROTEIN S12 32 91 IPR000530 GO:0003735|GO:0005840|GO:0006412
Bva05g01506 132 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 32 90 IPR004038 -
Bva05g01506 132 PANTHER 40S RIBOSOMAL PROTEIN S12 32 91 - -
Bva05g01506 132 SUPERFAMILY L30e-like 31 91 IPR029064 -
Bva05g01506 132 Gene3D - 24 119 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01506 Bva-Chr5 9177943 9180349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01506 33 90 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 68.966 1.83e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01506 K02951 - sly:101247070 96.6709