Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01471 ATGTACCccacttcttcttcctcatccCAGAAACCCATACCCGCACAAAGCGGGTTGACCCGCTTCAGCTCCGCACCCAGCTCCCTCTTGACCACAGCCGTCAATGAGGTCACCGGACCTGACTGTGAACTCTCCGCCGTCGGATCACGCTCTAGACTCGGTCATTATTTCTCCGGCGACTCATCTTCCATCACCTCCGAATCAACCTGCAAAGTCAACTCATCCATCGATTCAAACCAGCCCAAATTAGGATTACAGAGATCCTACGGTCTCCATGAGACAGCCGCTGGCGACTTCCCTACACCTAGCCACTTAAGAAGCGCCGCCGCCGCCGGTGGAGCTGGCTCCCCGTCTTCTCCTTCGGCTTTGGTTCGTCAGAAGAGCTCACCGGCTGACTTCCTTAGCTATCTTACTGATCCAATTGAACACAACGGAGGCTTCTCAATTTCAAAGGGCTCTGGAAGCTATAGCTCACAAGAGGATGGCCCTGGTGTGTCAAGGTTGAAATCTCAGTTGAGCTTCACTGGGCAAGATTCTCTTTCTCATATATCAGAGGATAGCGAAAACATTGTTGATGGCATCAGTTCTGACAATGGCCACCATAGAACTACACATTCTTATGCAACTACCAGCTTTGGAATGGACTCATGGGATAATAATTCAAAGTCCATCATGTTTGCTCCACCAAGTAAACGTGCTAAGGATATTGATGGAGACATTCTAAACTGTCTCAACACGTTGGATTCTCAGTTTAGCCTGCCACAGACAACTCTGGAAATGGCAACAGTGGAGAAACTACTTAATATTCCTGAAGATTCAGTCCCGTGTAAAATCCGTGCTAAGCGTGGATGTGCCACTCATCCACGAAGCATCGCAGAACGTGAGAGAAGAACTAGAATAAGTGGGAAGCTAAAGAAATTACAGGAGCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCTGTACAACATATCAAAGGGCTTCAAGGTCAAATTCAGAAGCTCCATCAAGAACTTGATAATTGCACCTGTGGATGTAAAGAAagcacata 1070 0.4626 MYPTSSSSSQKPIPAQSGLTRFSSAPSSLLTTAVNEVTGPDCELSAVGSRSRLGHYFSGDSSSITSESTCKVNSSIDSNQPKLGLQRSYGLHETAAGDFPTPSHLRSAAAAGGAGSPSSPSALVRQKSSPADFLSYLTDPIEHNGGFSISKGSGSYSSQEDGPGVSRLKSQLSFTGQDSLSHISEDSENIVDGISSDNGHHRTTHSYATTSFGMDSWDNNSKSIMFAPPSKRAKDIDGDILNCLNTLDSQFSLPQTTLEMATVEKLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQGQIQKLHQELDNCTCGCKEST 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01471 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 347 IPR036638 GO:0046983
Bva05g01471 356 MobiDBLite consensus disorder prediction 147 167 - -
Bva05g01471 356 MobiDBLite consensus disorder prediction 1 25 - -
Bva05g01471 356 CDD bHLH_AtbHLH_like 289 341 IPR045239 -
Bva05g01471 356 SMART finulus 290 340 IPR011598 GO:0046983
Bva05g01471 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983
Bva05g01471 356 MobiDBLite consensus disorder prediction 148 167 - -
Bva05g01471 356 Pfam Helix-loop-helix DNA-binding domain 289 335 IPR011598 GO:0046983
Bva05g01471 356 PANTHER TRANSCRIPTION FACTOR BHLH129 18 349 - -
Bva05g01471 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 349 - -
Bva05g01471 356 MobiDBLite consensus disorder prediction 93 125 - -
Bva05g01471 356 Gene3D - 285 353 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01471 Bva-Chr5 8526409 8536790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01471 13 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 48.118 4.70e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g01471 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01471 - - jre:108986309 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01471 05 8526409 8536790 Bva05g01471 05 8526409 8536790 ECH